Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 4.1e-148 528.5 362 100.0
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 2.0e-94 350.1 362 69.1
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 2.4e-92 343.2 362 67.7
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 5.1e-90 335.5 362 75.4
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 1.3e-88 330.9 390 62.6
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 2.8e-88 329.7 363 66.9
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.5e-86 323.9 275 90.5
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.3e-82 310.1 362 59.4
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.3e-82 310.1 362 59.4
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.8e-80 303.1 362 61.9
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.8e-80 303.1 362 61.9
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.8e-80 303.1 362 61.9
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 2.2e-77 293.5 362 63.3
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.2e-76 289.7 362 61.9
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.9e-65 253.8 362 55.2
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 5.7e-65 252.3 364 58.2
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 4.8e-64 249.2 361 54.3
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 4.8e-64 249.2 341 58.9
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 8.2e-64 248.4 362 50.8
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.4e-63 247.7 362 52.5
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.8e-63 247.3 273 62.3
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.8e-63 247.3 362 50.8
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 9.0e-63 245.0 363 52.9
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 9.0e-63 245.0 361 52.6
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.2e-62 244.6 365 52.6
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.2e-62 244.6 286 53.5
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.6e-62 243.4 349 45.3
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 3.4e-62 243.0 291 58.1
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 5.9e-62 242.3 265 53.2
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.0e-61 241.5 292 57.2
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.2e-61 240.4 376 51.9
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 2.2e-61 240.4 362 44.8
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 2.2e-61 240.4 291 62.9
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.9e-61 240.0 376 48.9
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 5.0e-61 239.2 337 58.2
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 8.5e-61 238.4 286 53.5
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.4e-60 237.7 368 55.7
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 3.2e-60 236.5 295 56.9
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 4.2e-60 236.1 371 50.7
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 9.3e-60 235.0 287 64.5
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.2e-59 234.6 367 46.0
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.6e-59 234.2 275 59.6
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 7.9e-59 231.9 292 54.1
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 7.9e-59 231.9 257 63.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 7.9e-59 231.9 362 48.1
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.0e-58 231.5 191 64.9
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.3e-58 231.1 264 62.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.8e-58 230.7 293 56.0
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 3.0e-58 229.9 250 64.4
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 5.1e-58 229.2 363 50.4
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 6.7e-58 228.8 292 51.7
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 8.8e-58 228.4 362 50.6
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 8.8e-58 228.4 336 55.1
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 8.8e-58 228.4 271 54.6
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.9e-57 227.3 361 49.6
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 2.5e-57 226.9 261 56.7
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.5e-57 226.9 272 54.8
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 7.4e-57 225.3 376 41.5
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 9.7e-57 224.9 287 52.6
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.8e-56 223.4 168 68.5
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 4.8e-56 222.6 280 73.6
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 8.2e-56 221.9 283 54.1
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 1.1e-55 221.5 367 52.0
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.8e-55 220.7 362 60.2
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.4e-55 220.3 367 51.8
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.1e-55 219.9 367 48.2
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 4.1e-55 219.5 276 63.4
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 4.1e-55 219.5 286 49.3
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 5.3e-55 219.2 362 59.9
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 6.9e-55 218.8 272 63.6
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 9.1e-55 218.4 380 51.1
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 2.6e-54 216.9 361 43.2
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 5.9e-54 215.7 366 55.2
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 5.9e-54 215.7 284 44.7
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 7.7e-54 215.3 273 47.3
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.0e-53 214.9 276 58.7
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.3e-53 214.5 282 57.8
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.3e-53 214.5 387 47.3
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.7e-53 214.2 336 54.5
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 5.0e-53 212.6 284 44.0
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 8.5e-53 211.8 283 67.1
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.4e-52 211.1 273 65.9
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.5e-52 210.3 331 42.0
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.2e-52 209.9 358 56.1
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 4.2e-52 209.5 186 60.2
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 4.7e-51 206.1 285 51.2
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.5e-49 201.1 363 47.9
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.3e-49 199.9 193 69.4
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 3.3e-49 199.9 377 51.5
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 4.4e-49 199.5 362 53.0
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 5.7e-49 199.1 379 51.2
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.3e-48 198.0 355 53.8
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 3.7e-48 196.4 290 40.7
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.2e-46 191.4 315 56.8
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.5e-46 191.0 303 50.5
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.5e-46 191.0 361 54.3
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 7.7e-46 188.7 228 48.7
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.2e-45 187.2 367 52.0
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.1e-44 184.9 361 54.0
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.1e-44 184.9 361 54.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 7.2e-44 182.2 243 62.1
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 1.4e-42 177.9 357 39.2
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.9e-42 176.4 288 62.8
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 6.7e-42 175.6 290 60.0
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.3e-41 173.3 189 50.8
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 5.7e-41 172.6 362 49.2
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 2.2e-40 170.6 290 63.4
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 3.1e-39 166.8 178 53.4
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.5e-36 157.1 233 48.1
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.2e-35 154.8 336 44.3
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.3e-33 146.7 158 67.7
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 5.9e-30 136.0 118 57.6
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.2e-28 129.8 189 43.4
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 4.7e-27 126.3 137 51.8
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.0e-26 125.2 167 43.1
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 5.2e-26 122.9 118 55.1
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.0e-25 120.9 105 61.9
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 2.7e-22 110.5 134 59.0
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 4.7e-19 99.8 223 51.1
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 7.5e-17 92.4 53 84.9
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 3.7e-16 90.1 53 83.0
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.7e-13 81.3 55 72.7
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.8e-13 80.1 48 75.0
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 5.0e-13 79.7 46 82.6
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 9.5e-12 75.5 45 80.0
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 9.5e-12 75.5 45 80.0
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 8.3e-08 62.4 66 51.5
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 8.3e-08 62.4 189 37.0
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.9e-07 61.2 57 56.1
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 3.5e-06 57.0 109 35.8
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 4.6e-06 56.6 63 46.0
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 7.8e-06 55.8 82 42.7


User provided reference genes

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