Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 8.5e-196 686.8 344 100.0
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.3e-122 443.7 282 77.7
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.4e-121 439.5 279 77.8
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.1e-118 430.6 273 77.7
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.4e-118 430.3 273 77.7
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 3.2e-118 429.1 276 76.4
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 9.7e-115 417.5 273 75.5
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 9.7e-115 417.5 273 75.5
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.6e-114 416.8 273 75.5
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.2e-114 416.4 283 72.8
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 3.7e-114 415.6 282 73.0
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-113 414.1 272 75.7
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.0e-112 409.8 273 74.4
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 4.5e-112 408.7 274 73.7
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.7e-111 406.8 314 66.2
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 2.2e-111 406.4 277 72.9
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-110 404.1 288 72.2
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.9e-86 323.6 255 62.4
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 4.9e-74 282.3 272 52.2
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 9.2e-73 278.1 272 50.7
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 3.5e-72 276.2 273 50.2
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 4.5e-72 275.8 272 51.1
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.3e-71 273.5 258 51.6
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 5.0e-71 272.3 266 50.0
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 5.0e-71 272.3 259 50.6
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.1e-70 271.2 277 49.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.5e-70 270.8 282 48.9
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.3e-70 269.6 257 52.1
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 5.6e-70 268.9 282 50.0
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 9.5e-70 268.1 252 51.6
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.2e-69 267.7 266 50.4
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.2e-69 267.7 285 47.0
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.6e-69 267.3 250 51.6
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 3.6e-69 266.2 253 50.6
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 4.7e-69 265.8 283 47.3
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.0e-68 264.6 245 53.9
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.4e-68 264.2 268 48.5
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.8e-68 263.8 272 47.4
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 3.0e-68 263.1 253 48.6
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 3.0e-68 263.1 272 48.2
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.0e-68 262.7 272 48.5
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.0e-68 262.7 272 47.4
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 5.2e-68 262.3 267 48.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 8.9e-68 261.5 252 49.6
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 2.0e-67 260.4 258 48.8
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 2.0e-67 260.4 273 48.4
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 2.6e-67 260.0 284 49.3
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.4e-67 259.6 274 49.6
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 4.4e-67 259.2 276 47.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 4.4e-67 259.2 264 47.7
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 5.7e-67 258.8 288 46.5
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 7.5e-67 258.5 258 50.4
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 9.8e-67 258.1 222 53.2
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 3.7e-66 256.1 256 49.6
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 3.7e-66 256.1 262 49.2
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 3.7e-66 256.1 263 49.8
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 6.4e-66 255.4 285 46.0
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 8.3e-66 255.0 271 49.4
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 8.3e-66 255.0 272 48.2
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 8.3e-66 255.0 249 52.2
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.1e-65 254.6 260 50.0
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.4e-65 254.2 257 49.8
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.4e-65 254.2 269 46.1
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.4e-65 254.2 282 48.2
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.4e-65 253.4 271 47.2
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.2e-65 253.1 225 59.1
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 4.1e-65 252.7 227 52.4
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 5.4e-65 252.3 252 50.4
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 5.4e-65 252.3 269 45.7
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 7.0e-65 251.9 252 50.4
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 9.2e-65 251.5 231 50.6
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.2e-64 251.1 271 47.6
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.0e-64 250.4 253 46.2
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 4.6e-64 249.2 272 47.8
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.0e-63 248.1 257 49.0
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.3e-63 247.7 256 48.4
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 1.3e-63 247.7 256 47.7
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.3e-63 246.9 273 45.4
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 2.3e-63 246.9 256 48.0
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 3.0e-63 246.5 258 48.1
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 5.0e-63 245.7 297 42.1
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 5.0e-63 245.7 251 46.6
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 6.6e-63 245.4 250 46.8
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 6.6e-63 245.4 253 48.6
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 6.6e-63 245.4 251 46.2
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.1e-62 244.6 270 46.3
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.5e-62 244.2 257 46.7
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.5e-62 244.2 267 48.3
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.9e-62 243.8 251 47.8
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.9e-62 243.8 276 48.9
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.9e-62 243.8 251 47.4
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 2.5e-62 243.4 253 49.8
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 7.3e-62 241.9 234 54.7
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 9.5e-62 241.5 256 48.0
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 9.5e-62 241.5 266 45.9
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.2e-61 241.1 240 50.4
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 2.1e-61 240.4 281 43.1
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 2.1e-61 240.4 256 48.4
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 4.7e-61 239.2 251 48.2
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 8.0e-61 238.4 276 46.7
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 1.0e-60 238.0 272 46.0
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.8e-60 237.3 180 61.7
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.8e-60 237.3 263 46.0
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 5.8e-59 232.3 255 46.7
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.7e-58 230.7 264 45.1
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 6.4e-58 228.8 232 49.1
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.4e-57 227.6 251 45.8
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 3.2e-57 226.5 275 42.2
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.1e-57 226.1 237 52.7
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.7e-56 223.4 260 43.8
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.3e-55 221.1 304 41.4
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.5e-54 217.6 272 43.4
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-52 210.3 190 58.9
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 8.9e-52 208.4 207 51.7
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 2.6e-51 206.8 179 56.4
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 4.4e-51 206.1 284 39.4
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 7.5e-51 205.3 245 40.8
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.4e-49 201.1 256 44.9
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-49 199.1 182 56.0
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 9.2e-49 198.4 241 42.7
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.2e-48 198.0 198 46.5
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 3.5e-48 196.4 253 45.8
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-47 194.5 221 48.4
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-47 194.1 175 56.6
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 8.6e-47 191.8 175 56.0
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 3.3e-46 189.9 175 56.0
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.6e-45 187.6 231 47.2
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 1.8e-44 184.1 263 37.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 2.6e-43 180.3 143 60.1
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 4.9e-42 176.0 143 59.4
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 8.4e-42 175.3 160 48.1
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-40 171.4 266 42.5
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-40 171.4 206 48.1
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.5e-38 164.5 140 57.9
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 4.0e-36 156.4 182 48.9
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 4.0e-36 156.4 182 48.9
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 5.8e-35 152.5 244 35.2
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 6.4e-34 149.1 214 39.3
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 3.9e-31 139.8 264 34.8
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 3.2e-25 120.2 98 60.2
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 3.2e-25 120.2 98 60.2
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 8.1e-21 105.5 133 47.4
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 4.9e-18 96.3 175 34.9
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.9e-17 94.4 78 50.0
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 6.2e-13 79.3 92 43.5
A01p31840 Brassica napus HOM05D004840 ORTHO05D005751 3.1e-12 77.0 119 41.2


User provided reference genes

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