Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.5e-172 609.4 306 100.0
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.9e-117 426.4 301 70.8
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.6e-113 413.3 301 69.1
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 2.8e-113 412.5 301 68.1
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 2.8e-113 412.5 301 68.1
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 4.7e-113 411.8 301 69.1
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 1.8e-112 409.8 301 67.8
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 5.2e-112 408.3 301 67.4
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 5.2e-112 408.3 301 67.4
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 6.8e-112 407.9 301 67.4
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.2e-111 407.1 301 68.8
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 2.0e-111 406.4 301 67.1
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 2.6e-111 406.0 301 67.8
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 5.8e-111 404.8 301 67.4
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.7e-110 403.3 303 67.0
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 1.7e-110 403.3 301 66.1
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 2.2e-110 402.9 301 68.4
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 2.9e-110 402.5 302 66.2
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 6.4e-110 401.4 307 63.8
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 1.4e-109 400.2 301 65.8
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 3.2e-109 399.1 301 66.1
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 3.2e-109 399.1 301 64.8
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 3.2e-109 399.1 301 64.5
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 9.2e-109 397.5 301 64.5
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.2e-108 397.1 299 65.9
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 2.1e-108 396.4 301 65.1
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 2.7e-108 396.0 303 64.4
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 2.7e-108 396.0 301 67.1
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 4.6e-108 395.2 301 66.1
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.3e-107 393.7 301 64.8
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.3e-107 393.7 301 65.8
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 2.3e-107 392.9 301 63.5
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 5.1e-107 391.7 301 64.5
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 6.6e-107 391.3 301 63.5
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 8.6e-107 391.0 301 64.1
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 1.1e-106 390.6 301 65.4
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 1.9e-106 389.8 301 65.1
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 2.5e-106 389.4 301 64.1
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 3.3e-106 389.0 301 63.5
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 9.5e-106 387.5 301 64.5
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 2.8e-105 386.0 301 63.8
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 3.6e-105 385.6 301 63.1
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 6.2e-105 384.8 301 63.1
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 6.2e-105 384.8 301 62.1
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 8.1e-105 384.4 327 60.9
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 1.8e-104 383.3 301 63.5
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 2.3e-104 382.9 301 63.8
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.3e-104 382.9 301 62.8
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.1e-104 382.5 301 62.1
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 4.0e-104 382.1 301 63.1
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 5.2e-104 381.7 301 63.5
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 5.2e-104 381.7 301 61.8
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 5.2e-104 381.7 301 64.1
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 8.9e-104 380.9 301 62.5
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 2.6e-103 379.4 302 64.9
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 3.4e-103 379.0 301 62.5
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 4.4e-103 378.6 301 64.5
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 5.8e-103 378.3 301 62.8
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 5.8e-103 378.3 301 63.1
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 1.7e-102 376.7 301 62.1
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 2.2e-102 376.3 301 62.5
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 4.9e-102 375.2 299 61.9
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.1e-101 374.0 301 62.5
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 1.9e-101 373.2 301 61.1
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 5.4e-101 371.7 301 61.1
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 5.4e-101 371.7 378 54.0
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 7.1e-101 371.3 300 62.0
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 9.2e-101 370.9 301 61.8
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 9.2e-101 370.9 303 59.4
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 1.6e-100 370.2 301 61.5
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 2.1e-100 369.8 301 63.1
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 2.1e-100 369.8 304 60.9
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 4.6e-100 368.6 313 60.4
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 1.3e-99 367.1 301 61.8
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.7e-99 366.7 301 61.5
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 2.3e-99 366.3 301 60.8
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 3.0e-99 365.9 301 60.8
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 3.0e-99 365.9 294 62.6
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 3.0e-99 365.9 303 58.7
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 5.1e-99 365.2 303 59.4
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 5.1e-99 365.2 301 60.5
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 2.1e-97 359.8 301 60.1
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 6.8e-96 354.8 299 59.5
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 9.9e-95 350.9 301 58.5
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 8.4e-94 347.8 272 64.0
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 1.9e-93 346.7 301 60.5
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 1.2e-92 344.0 303 57.1
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 1.6e-92 343.6 301 57.8
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 5.6e-90 335.1 293 58.7
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 1.6e-84 317.0 258 60.1
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 1.0e-83 314.3 330 51.8
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 1.0e-83 314.3 259 59.1
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 5.1e-83 312.0 249 62.7
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 6.6e-83 311.6 259 57.9
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 1.9e-82 310.1 249 63.1
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 5.6e-82 308.5 231 66.2
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 7.3e-82 308.1 259 58.7
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 9.6e-82 307.8 290 54.8
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 2.1e-81 306.6 251 59.4
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 9.0e-80 301.2 256 58.6
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 7.6e-79 298.1 301 53.8
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.4e-72 277.3 256 58.6
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.3e-70 270.8 304 49.7
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 3.2e-69 266.2 292 51.0
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 1.2e-68 264.2 214 65.0
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 4.6e-68 262.3 214 64.0
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 7.9e-68 261.5 219 60.7
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 2.0e-63 246.9 300 43.0
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 6.1e-60 235.3 213 54.9
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 5.7e-58 228.8 220 52.7
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 4.8e-57 225.7 190 59.5
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 1.0e-54 218.0 209 55.5
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 4.6e-52 209.1 299 39.1
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.6e-44 184.1 165 61.2
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 5.1e-43 179.1 286 35.0
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 6.5e-38 162.2 223 39.0
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 9.4e-37 158.3 207 40.1
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 5.3e-32 142.5 97 72.2
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 7.7e-31 138.7 210 42.4
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 1.6e-28 131.0 85 72.9
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 2.6e-26 123.6 83 69.9
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 3.4e-26 123.2 83 68.7
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 4.4e-26 122.9 83 68.7
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 7.0e-24 115.5 81 61.7
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.2e-23 114.8 81 61.7
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 4.5e-23 112.8 67 79.1
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 4.2e-21 106.3 307 27.0
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 1.8e-19 100.9 284 28.2
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 2.6e-18 97.1 62 67.7
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 4.1e-16 89.7 132 44.7
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 5.4e-16 89.4 95 52.6
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 1.7e-14 84.3 65 60.0
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 2.3e-14 84.0 60 65.0
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 2.5e-13 80.5 61 62.3
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 8.9e-11 72.0 42 81.0
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 2.0e-10 70.9 290 25.2
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 5.4e-08 62.8 75 44.0
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 2.3e-06 57.4 42 57.1
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 2.3e-06 57.4 42 57.1
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 2.3e-06 57.4 42 54.8
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 2.3e-06 57.4 39 69.2
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 3.9e-06 56.6 41 58.5


User provided reference genes

Program Settings