Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 4.8e-86 321.2 176 100.0
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 1.6e-41 173.3 176 66.5
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 4.7e-41 171.8 178 66.3
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 1.4e-40 170.2 179 66.5
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 1.8e-40 169.9 178 65.7
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.2e-39 167.2 176 61.9
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 4.4e-39 165.2 178 66.9
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 5.8e-39 164.9 178 64.6
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 5.8e-39 164.9 178 64.6
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 5.8e-39 164.9 178 64.6
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 9.9e-39 164.1 176 64.2
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 1.3e-38 163.7 179 64.2
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 2.9e-38 162.5 176 63.1
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 1.1e-37 160.6 176 62.5
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 1.4e-37 160.2 178 62.4
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 3.2e-37 159.1 176 62.5
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 4.1e-37 158.7 179 64.2
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 4.1e-37 158.7 179 64.2
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 7.3e-34 147.9 173 63.6
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 8.1e-33 144.4 175 60.0
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 8.4e-30 134.4 170 54.7
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 1.1e-29 134.0 164 53.7
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 1.4e-29 133.7 175 56.6
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 7.1e-29 131.3 168 53.0
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 1.2e-28 130.6 178 50.6
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 6.0e-28 128.3 171 52.6
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.3e-27 127.1 166 52.4
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 2.3e-27 126.3 139 61.2
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 3.0e-27 125.9 174 52.3
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 5.1e-27 125.2 174 52.3
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.5e-26 123.6 175 49.7
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 1.6e-25 120.2 175 47.4
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 4.7e-25 118.6 179 48.6
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 4.7e-25 118.6 179 52.0
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 8.1e-25 117.9 153 53.6
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 1.8e-24 116.7 110 63.6
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.8e-24 116.7 168 52.4
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 3.1e-24 115.9 178 47.8
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 1.2e-23 114.0 178 49.4
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 1.2e-23 114.0 180 46.7
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 1.5e-23 113.6 179 48.6
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 2.0e-23 113.2 163 49.1
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 3.4e-23 112.5 162 50.6
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 4.4e-23 112.1 118 60.2
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 5.8e-23 111.7 142 49.3
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 7.6e-23 111.3 168 49.4
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 9.9e-23 110.9 179 46.9
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 1.3e-22 110.5 115 60.0
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 1.7e-22 110.2 178 46.1
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 2.2e-22 109.8 179 46.4
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 2.2e-22 109.8 167 46.7
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 2.2e-22 109.8 178 44.9
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.2e-22 109.8 178 44.9
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.2e-22 109.8 178 44.9
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.2e-22 109.8 178 44.9
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 2.2e-22 109.8 175 48.6
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 3.8e-22 109.0 163 47.9
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 3.8e-22 109.0 159 47.8
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 4.9e-22 108.6 116 59.5
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 8.4e-22 107.8 167 46.7
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 1.1e-21 107.5 115 59.1
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 1.4e-21 107.1 116 59.5
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 1.9e-21 106.7 102 60.8
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 1.9e-21 106.7 176 46.6
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 2.4e-21 106.3 91 63.7
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 2.4e-21 106.3 172 45.9
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.4e-21 106.3 177 46.3
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 2.4e-21 106.3 180 46.1
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 3.2e-21 105.9 163 47.9
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 3.2e-21 105.9 109 57.8
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 4.2e-21 105.5 165 46.1
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 5.4e-21 105.1 161 47.8
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 5.4e-21 105.1 186 46.8
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 7.1e-21 104.8 108 58.3
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 7.1e-21 104.8 176 46.0
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 1.2e-20 104.0 176 44.9
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.6e-20 103.6 178 44.4
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 2.7e-20 102.8 170 47.1
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 2.7e-20 102.8 156 47.4
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 3.5e-20 102.4 174 44.3
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 4.6e-20 102.1 117 56.4
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 4.6e-20 102.1 109 56.0
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 4.6e-20 102.1 119 55.5
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 4.6e-20 102.1 164 45.1
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 7.8e-20 101.3 166 44.6
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 7.8e-20 101.3 115 57.4
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 1.3e-19 100.5 195 42.6
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 1.3e-19 100.5 114 56.1
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 1.7e-19 100.1 178 42.7
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 3.0e-19 99.4 179 46.4
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 3.9e-19 99.0 118 50.8
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 6.6e-19 98.2 87 63.2
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 6.6e-19 98.2 176 42.0
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 8.7e-19 97.8 183 43.7
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 1.1e-18 97.4 177 42.9
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 1.9e-18 96.7 179 44.1
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 1.9e-18 96.7 169 41.4
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 1.9e-18 96.7 182 45.1
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 2.5e-18 96.3 161 45.3
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 2.5e-18 96.3 169 40.8
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 3.3e-18 95.9 170 44.7
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 3.3e-18 95.9 119 52.9
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 3.3e-18 95.9 261 36.4
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 4.3e-18 95.5 168 44.0
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 5.6e-18 95.1 117 55.6
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 7.3e-18 94.7 166 44.6
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 7.3e-18 94.7 149 45.0
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 7.3e-18 94.7 175 44.0
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 7.3e-18 94.7 181 42.0
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 9.6e-18 94.4 131 48.1
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 1.3e-17 94.0 165 43.0
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 1.3e-17 94.0 174 45.4
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 1.6e-17 93.6 98 59.2
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 1.6e-17 93.6 105 53.3
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.1e-17 93.2 185 45.4
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 2.1e-17 93.2 176 44.3
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 2.8e-17 92.8 173 41.0
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 2.8e-17 92.8 159 44.7
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 2.8e-17 92.8 90 57.8
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 2.8e-17 92.8 136 47.8
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 3.6e-17 92.4 99 56.6
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 4.8e-17 92.0 147 41.5
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.2e-17 91.7 147 44.9
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 1.1e-16 90.9 175 40.6
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 1.1e-16 90.9 173 41.0
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 2.4e-16 89.7 179 43.0
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.4e-16 89.7 177 43.5
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 3.1e-16 89.4 116 52.6
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 3.1e-16 89.4 158 41.1
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 3.1e-16 89.4 176 45.5
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 4.0e-16 89.0 159 42.8
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 5.3e-16 88.6 167 40.7
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 6.9e-16 88.2 174 40.2
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.5e-15 87.0 167 42.5
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.5e-15 87.0 176 40.3
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 1.5e-15 87.0 91 53.8
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 3.4e-15 85.9 116 50.9
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 4.5e-15 85.5 169 40.2
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 5.8e-15 85.1 100 53.0
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 1.3e-14 84.0 171 43.9
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 2.9e-14 82.8 110 45.5
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 2.9e-14 82.8 107 48.6
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 2.9e-14 82.8 155 40.6
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 3.8e-14 82.4 100 52.0
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 3.8e-14 82.4 118 47.5
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 3.8e-14 82.4 46 87.0
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 4.9e-14 82.0 99 49.5
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 4.9e-14 82.0 103 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 8.4e-14 81.3 47 87.2
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.1e-13 80.9 167 41.3
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.4e-13 80.5 173 38.2
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 1.4e-13 80.5 105 48.6
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 1.9e-13 80.1 177 43.5
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 7.1e-13 78.2 110 52.7
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.2e-12 77.4 114 46.5
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 1.2e-12 77.4 137 43.8
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 3.5e-12 75.9 49 73.5
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 4.6e-12 75.5 170 37.1
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 3.3e-10 69.3 55 67.3
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 1.6e-09 67.0 144 36.1
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 7.6e-07 58.2 90 45.6
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 9.9e-07 57.8 91 39.6
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 4.9e-06 55.5 109 33.9


User provided reference genes

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