Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 2.4e-66 255.4 131 100.0
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 1.3e-48 196.4 114 86.8
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 3.3e-47 191.8 116 85.3
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 1.2e-46 189.9 108 88.0
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 2.8e-46 188.7 108 88.0
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 3.6e-46 188.3 108 88.0
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 4.7e-46 188.0 108 88.0
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 1.1e-45 186.8 108 87.0
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 1.1e-45 186.8 108 87.0
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 1.1e-45 186.8 108 87.0
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 1.1e-45 186.8 108 87.0
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 1.4e-45 186.4 108 87.0
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 3.1e-45 185.3 108 86.1
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 6.8e-45 184.1 108 86.1
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 2.9e-43 178.7 109 83.5
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 1.4e-42 176.4 107 80.4
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 7.3e-39 164.1 104 82.7
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 1.8e-37 159.5 105 76.2
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 2.4e-37 159.1 106 73.6
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 4.0e-37 158.3 109 73.4
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 9.0e-37 157.1 107 72.9
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 1.2e-36 156.8 107 72.0
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 1.5e-36 156.4 108 70.4
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 1.5e-36 156.4 105 76.2
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 3.4e-36 155.2 107 71.0
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 4.4e-36 154.8 108 68.5
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 1.7e-35 152.9 107 70.1
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 2.2e-35 152.5 107 70.1
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 2.2e-35 152.5 104 76.0
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 2.9e-35 152.1 107 72.0
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 4.9e-35 151.4 107 70.1
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 1.4e-34 149.8 106 69.8
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 1.4e-34 149.8 102 74.5
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 1.4e-34 149.8 106 68.9
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 4.2e-34 148.3 107 66.4
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 7.1e-34 147.5 107 71.0
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 1.2e-33 146.7 108 71.3
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 1.6e-33 146.4 108 70.4
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 1.6e-33 146.4 106 68.9
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 1.6e-33 146.4 106 68.9
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 2.1e-33 146.0 107 67.3
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 2.1e-33 146.0 106 68.9
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 2.7e-33 145.6 106 65.1
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 2.7e-33 145.6 107 68.2
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 4.6e-33 144.8 107 69.2
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 4.6e-33 144.8 106 66.0
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 6.0e-33 144.4 107 67.3
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 6.0e-33 144.4 107 68.2
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 7.9e-33 144.1 107 67.3
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 7.9e-33 144.1 108 67.6
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 1.0e-32 143.7 106 67.9
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.0e-32 143.7 106 64.2
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.0e-32 143.7 107 65.4
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 1.3e-32 143.3 107 67.3
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 1.7e-32 142.9 106 67.0
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.3e-32 142.5 106 67.0
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.3e-32 142.5 106 67.0
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 3.0e-32 142.1 106 67.9
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 3.9e-32 141.7 106 66.0
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 3.9e-32 141.7 108 63.9
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 5.1e-32 141.4 106 64.2
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 6.6e-32 141.0 107 68.2
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 6.6e-32 141.0 107 68.2
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 8.7e-32 140.6 106 65.1
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.1e-31 140.2 106 65.1
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 1.1e-31 140.2 106 63.2
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 1.1e-31 140.2 95 73.7
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 1.1e-31 140.2 106 66.0
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 1.5e-31 139.8 103 70.9
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 1.5e-31 139.8 109 61.5
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 1.5e-31 139.8 108 63.0
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 1.5e-31 139.8 104 64.4
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 1.5e-31 139.8 106 65.1
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 1.5e-31 139.8 105 69.5
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 1.9e-31 139.4 106 65.1
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 2.5e-31 139.0 105 66.7
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 2.5e-31 139.0 107 65.4
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 2.5e-31 139.0 106 64.2
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 2.5e-31 139.0 105 65.7
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 2.5e-31 139.0 105 65.7
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 4.3e-31 138.3 104 63.5
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 5.6e-31 137.9 105 63.8
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 9.6e-31 137.1 100 69.0
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 9.6e-31 137.1 106 61.3
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 9.6e-31 137.1 107 63.6
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.6e-30 136.3 106 65.1
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 2.8e-30 135.6 96 70.8
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 4.8e-30 134.8 105 65.7
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 8.1e-30 134.0 101 66.3
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 8.1e-30 134.0 104 63.5
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 1.1e-29 133.7 96 68.8
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 1.4e-29 133.3 103 66.0
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 1.8e-29 132.9 110 61.8
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 2.4e-29 132.5 95 70.5
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 2.4e-29 132.5 99 60.6
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 3.1e-29 132.1 95 68.4
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 4.0e-29 131.7 107 65.4
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 5.3e-29 131.3 97 67.0
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 6.9e-29 131.0 94 69.1
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 9.0e-29 130.6 106 63.2
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 1.2e-28 130.2 97 67.0
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 1.5e-28 129.8 96 64.6
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 2.0e-28 129.4 106 65.1
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 3.4e-28 128.6 131 54.2
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 3.4e-28 128.6 94 68.1
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 3.4e-28 128.6 97 67.0
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 4.5e-28 128.3 91 69.2
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.3e-27 126.7 97 66.0
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 1.3e-27 126.7 96 62.5
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 1.7e-27 126.3 106 57.5
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 1.7e-27 126.3 102 66.7
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.9e-27 125.6 97 67.0
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 6.4e-27 124.4 101 60.4
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 6.4e-27 124.4 106 61.3
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 2.4e-26 122.5 118 57.6
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 4.2e-26 121.7 108 58.3
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 7.1e-26 120.9 96 65.6
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.2e-25 120.2 83 71.1
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 2.7e-25 119.0 97 61.9
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 1.3e-24 116.7 98 62.2
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 1.5e-23 113.2 104 54.8
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 1.9e-23 112.8 92 64.1
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 1.3e-22 110.2 82 67.1
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 8.1e-22 107.5 82 64.6
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.1e-21 107.1 102 51.0
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.0e-19 100.5 70 72.9
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 9.3e-18 94.0 86 53.5
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 9.3e-18 94.0 100 50.0
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 1.8e-16 89.7 101 45.5
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 3.0e-16 89.0 79 57.0
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.9e-15 86.3 66 66.7
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 1.6e-14 83.2 105 52.4
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 6.3e-14 81.3 56 71.4
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 3.2e-10 68.9 58 60.3
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 3.2e-10 68.9 103 41.7
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.5e-07 59.3 52 55.8
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 3.3e-07 58.9 81 46.9


User provided reference genes

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