Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.9e-33 145.2 71 100.0
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.3e-21 105.9 60 86.7
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 8.3e-21 103.2 60 83.3
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 8.3e-21 103.2 60 83.3
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 8.3e-21 103.2 60 83.3
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 8.3e-21 103.2 60 83.3
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 8.3e-21 103.2 60 83.3
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 8.3e-21 103.2 62 80.6
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.1e-20 102.8 60 81.7
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 1.9e-20 102.1 60 81.7
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 1.9e-20 102.1 60 81.7
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 1.9e-20 102.1 60 81.7
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 3.2e-20 101.3 60 81.7
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 9.2e-20 99.8 60 80.0
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 9.2e-20 99.8 60 80.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.3e-18 95.9 62 72.6
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 6.6e-18 93.6 62 72.6
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 6.6e-18 93.6 62 74.2
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 8.6e-18 93.2 62 72.6
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 8.6e-18 93.2 62 72.6
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.1e-17 92.8 62 69.4
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.1e-17 92.8 62 72.6
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.5e-17 92.4 62 71.0
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.5e-17 92.4 62 72.6
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.5e-17 92.4 62 72.6
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.9e-17 92.0 62 71.0
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 2.5e-17 91.7 62 69.4
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 2.5e-17 91.7 62 69.4
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 2.5e-17 91.7 62 71.0
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 2.5e-17 91.7 62 71.0
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 3.3e-17 91.3 62 66.1
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 3.3e-17 91.3 62 72.6
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.3e-17 91.3 62 72.6
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 4.3e-17 90.9 60 73.3
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 5.6e-17 90.5 62 67.7
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 5.6e-17 90.5 62 69.4
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 5.6e-17 90.5 62 69.4
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 5.6e-17 90.5 62 71.0
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 5.6e-17 90.5 62 71.0
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 7.3e-17 90.1 62 69.4
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 7.3e-17 90.1 60 71.7
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 7.3e-17 90.1 62 69.4
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 7.3e-17 90.1 62 69.4
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 9.5e-17 89.7 62 67.7
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 9.5e-17 89.7 62 67.7
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 9.5e-17 89.7 62 71.0
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.2e-16 89.4 63 68.3
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.2e-16 89.4 62 64.5
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.2e-16 89.4 61 72.1
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.2e-16 89.4 62 67.7
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.2e-16 89.4 62 71.0
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.2e-16 89.4 61 68.9
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.6e-16 89.0 62 69.4
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.6e-16 89.0 62 69.4
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.6e-16 89.0 62 72.6
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.6e-16 89.0 62 69.4
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.1e-16 88.6 62 69.4
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 2.1e-16 88.6 62 67.7
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 2.1e-16 88.6 62 69.4
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.8e-16 88.2 62 67.7
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.8e-16 88.2 62 71.0
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 2.8e-16 88.2 62 69.4
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 2.8e-16 88.2 62 69.4
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 2.8e-16 88.2 62 69.4
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.8e-16 88.2 62 69.4
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 3.6e-16 87.8 62 71.0
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 3.6e-16 87.8 62 66.1
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 3.6e-16 87.8 62 67.7
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 6.2e-16 87.0 62 67.7
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 6.2e-16 87.0 62 67.7
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 6.2e-16 87.0 62 69.4
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 6.2e-16 87.0 62 66.1
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 6.2e-16 87.0 60 71.7
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 8.1e-16 86.7 62 66.1
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 8.1e-16 86.7 62 66.1
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.1e-15 86.3 62 67.7
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.1e-15 86.3 62 67.7
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.1e-15 86.3 62 62.9
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.1e-15 86.3 62 62.9
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 1.1e-15 86.3 62 69.4
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 1.1e-15 86.3 62 62.9
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 1.1e-15 86.3 62 64.5
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.4e-15 85.9 62 64.5
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.4e-15 85.9 62 66.1
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.8e-15 85.5 62 67.7
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 2.3e-15 85.1 62 67.7
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 2.3e-15 85.1 62 66.1
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.1e-15 84.7 62 66.1
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 3.1e-15 84.7 63 65.1
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 8.9e-15 83.2 62 62.9
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 8.9e-15 83.2 62 62.9
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 1.5e-14 82.4 62 66.1
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 2.0e-14 82.0 62 64.5
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.0e-14 82.0 62 62.9
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.6e-14 81.6 69 58.0
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.6e-14 81.6 69 58.0
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 2.6e-14 81.6 62 64.5
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 7.5e-14 80.1 62 62.9
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 1.7e-13 79.0 62 59.7
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 2.9e-13 78.2 62 62.9
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.4e-13 77.0 69 55.1
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.2e-12 74.7 87 46.0
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 7.1e-12 73.6 62 58.1
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.2e-11 72.8 62 58.1
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 2.7e-11 71.6 62 56.5
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.3e-10 69.3 49 71.4
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 2.3e-10 68.6 62 53.2
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.9e-09 65.5 51 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.5e-09 65.1 62 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.3e-09 64.7 60 50.0
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 4.3e-09 64.3 33 75.8
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 6.2e-08 60.5 62 46.8
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.1e-07 58.2 31 77.4
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 6.8e-07 57.0 40 62.5
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 3.4e-06 54.7 61 44.3
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 7.6e-06 53.5 62 46.8


User provided reference genes

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