Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G8060 Aethionema arabicum HOM05D010937 ORTHO05D012265 1.5e-60 236.1 126 100.0
AL8G23180 Arabidopsis lyrata HOM05D010937 ORTHO05D012265 7.3e-36 154.1 144 65.3
Sp2g19770 Schrenkiella parvula HOM05D010937 ORTHO05D012265 4.7e-35 151.4 140 65.7
SpUn0021_0080 Schrenkiella parvula HOM05D010937 ORTHO05D012265 4.7e-35 151.4 140 65.7
AT5G49450 Arabidopsis thaliana HOM05D010937 ORTHO05D012265 6.8e-34 147.5 143 63.6
Thhalv10005532m.g Eutrema salsugineum HOM05D010937 ORTHO05D012265 2.6e-33 145.6 128 68.0
C07p39910 Brassica napus HOM05D002944 ORTHO05D003377 9.9e-33 143.7 135 64.4
CARHR182100 Cardamine hirsuta HOM05D010937 ORTHO05D012265 1.7e-32 142.9 142 64.1
BcaC06g30697 Brassica carinata HOM05D010937 ORTHO05D012265 3.7e-32 141.7 139 63.3
BcaC06g30695 Brassica carinata HOM05D010937 ORTHO05D012265 8.4e-32 140.6 126 67.5
BcaNung02604 Brassica carinata HOM05D010937 ORTHO05D012265 8.4e-32 140.6 126 67.5
BolC7t44521H Brassica oleracea HOM05D010937 ORTHO05D012265 8.4e-32 140.6 126 67.5
BcaC04g23741 Brassica carinata HOM05D010937 ORTHO05D012265 1.1e-31 140.2 137 62.0
BcaB04g19607 Brassica carinata HOM05D010937 ORTHO05D012265 1.4e-31 139.8 138 63.8
Carub.0008s0931 Capsella rubella HOM05D010937 ORTHO05D012265 7.1e-31 137.5 150 60.0
A06p38340 Brassica napus HOM05D010937 ORTHO05D012265 9.2e-31 137.1 126 65.9
BraA06t26749Z Brassica rapa HOM05D010937 ORTHO05D012265 9.2e-31 137.1 126 65.9
A09p04820 Brassica napus HOM05D002944 ORTHO05D003377 3.3e-28 128.6 97 74.2
BolC9t53444H Brassica oleracea HOM05D002944 ORTHO05D003377 3.3e-28 128.6 97 74.2
BraA09t36119Z Brassica rapa HOM05D002944 ORTHO05D003377 3.3e-28 128.6 97 74.2
C09p05200 Brassica napus HOM05D002944 ORTHO05D003377 1.6e-27 126.3 97 73.2
THA.LOC104818890 Tarenaya hassleriana HOM05D010937 ORTHO05D012265 1.8e-26 122.9 151 56.3
Thecc.04G298600 Theobroma cacao HOM05D000697 ORTHO05D000169 2.3e-13 79.3 96 47.9
Cpa.g.sc9.75 Carica papaya HOM05D000697 ORTHO05D012265 8.7e-13 77.4 82 53.7
Duzib151G0842 Durio zibethinus HOM05D000697 ORTHO05D000169 2.5e-12 75.9 82 48.8
COL.COLO4_34637 Corchorus olitorius HOM05D000697 ORTHO05D000169 9.6e-12 73.9 97 45.4
Gorai.006G079800 Gossypium raimondii HOM05D000697 ORTHO05D000169 1.3e-11 73.6 87 43.7
Gohir.D09G065100 Gossypium hirsutum HOM05D000697 ORTHO05D000169 2.8e-11 72.4 87 42.5
Potri.010G142900 Populus trichocarpa HOM05D000697 ORTHO05D012265 2.8e-11 72.4 109 44.0
Gohir.A09G065900 Gossypium hirsutum HOM05D000697 ORTHO05D000169 8.1e-11 70.9 85 43.5
Sabra08G0080600 Salix brachista HOM05D000697 ORTHO05D000169 2.4e-10 69.3 119 40.3
Eucgr.H04038 Eucalyptus grandis HOM05D000697 ORTHO05D000169 3.1e-10 68.9 107 45.8
Sabra10G0110800 Salix brachista HOM05D000697 ORTHO05D012265 6.9e-10 67.8 97 44.3
Atru.chr4.3026 Acer truncatum HOM05D010937 ORTHO05D012265 1.5e-09 66.6 78 50.0
Gohir.A07G128500 Gossypium hirsutum HOM05D000697 ORTHO05D000169 1.5e-09 66.6 95 44.2
Gohir.D07G132900 Gossypium hirsutum HOM05D000697 ORTHO05D000169 1.5e-09 66.6 95 44.2
Gorai.001G144200 Gossypium raimondii HOM05D000697 ORTHO05D000169 1.5e-09 66.6 95 44.2
AUR62011806 Chenopodium quinoa HOM05D000697 ORTHO05D000169 2.6e-09 65.9 123 38.2
Duzib133G0134 Durio zibethinus HOM05D000697 ORTHO05D000169 2.6e-09 65.9 85 47.1
Cpa.g.sc18.43 Carica papaya HOM05D000697 ORTHO05D000169 3.4e-09 65.5 120 40.0
Cfa015333 Carpinus fangiana HOM05D000697 ORTHO05D000169 4.5e-09 65.1 102 43.1
Gorai.008G139700 Gossypium raimondii HOM05D000697 ORTHO05D000169 5.8e-09 64.7 102 43.1
Gohir.D12G128700 Gossypium hirsutum HOM05D000697 ORTHO05D000169 7.6e-09 64.3 85 45.9
Potri.008G106700 Populus trichocarpa HOM05D000697 ORTHO05D000169 7.6e-09 64.3 109 41.3
AUR62024652 Chenopodium quinoa HOM05D000697 ORTHO05D000169 9.9e-09 63.9 123 38.2
TWI18G0286 Tripterygium wilfordii HOM05D000697 ORTHO05D000169 9.9e-09 63.9 96 46.9
Duzib138G1356 Durio zibethinus HOM05D000697 ORTHO05D000169 1.3e-08 63.5 102 44.1
Manes.06G019400 Manihot esculenta HOM05D000697 ORTHO05D012265 1.3e-08 63.5 88 44.3
Gohir.A12G125000 Gossypium hirsutum HOM05D000697 ORTHO05D000169 1.7e-08 63.2 85 44.7
PGR004G0462 Punica granatum HOM05D000697 ORTHO05D000169 2.2e-08 62.8 97 42.3
EL10As5g23530 Beta vulgaris HOM05D000697 ORTHO05D000169 2.9e-08 62.4 123 37.4
Dinv10098 Davidia involucrata HOM05D000697 ORTHO05D000169 2.9e-08 62.4 113 40.7
Medtr7g109510 Medicago truncatula HOM05D000697 ORTHO05D000169 2.9e-08 62.4 116 39.7
BcaNung00684 Brassica carinata HOM05D000697 ORTHO05D000169 4.9e-08 61.6 105 43.8
C01p04200 Brassica napus HOM05D000697 ORTHO05D000169 4.9e-08 61.6 105 43.8
BolC1t00408H Brassica oleracea HOM05D000697 ORTHO05D000169 4.9e-08 61.6 105 43.8
TWI36G1120 Tripterygium wilfordii HOM05D000697 ORTHO05D000169 4.9e-08 61.6 96 44.8
Duzib211G0124 Durio zibethinus HOM05D000697 ORTHO05D000169 6.4e-08 61.2 95 43.2
Lalb_Chr21g0309581 Lupinus albus HOM05D000697 ORTHO05D000169 6.4e-08 61.2 95 45.3
Lalb_Chr06g0166861 Lupinus albus HOM05D000697 ORTHO05D000169 8.4e-08 60.8 95 41.1
SGA_v2.0_scaffold376G50284 Striga asiatica HOM05D000697 ORTHO05D000169 8.4e-08 60.8 106 39.6
CiPaw.07G117500 Carya illinoinensis HOM05D000697 ORTHO05D000169 1.1e-07 60.5 96 45.8
COL.COLO4_23232 Corchorus olitorius HOM05D000697 ORTHO05D000169 1.1e-07 60.5 95 45.3
Nitab4.5_0004873g0010 Nicotiana tabacum HOM05D000697 ORTHO05D000169 1.1e-07 60.5 114 37.7
Gorai.004G050400 Gossypium raimondii HOM05D000697 ORTHO05D000169 1.4e-07 60.1 85 45.9
Potri.004G158200 Populus trichocarpa HOM05D000697 ORTHO05D000169 1.4e-07 60.1 124 37.9
Potri.014G120800 Populus trichocarpa HOM05D000697 ORTHO05D000169 1.4e-07 60.1 102 41.2
CANSAT25G0922 Cannabis sativa HOM05D000697 ORTHO05D000169 1.9e-07 59.7 95 42.1
Cfa005801 Carpinus fangiana HOM05D000697 ORTHO05D000169 1.9e-07 59.7 95 46.3
Gohir.D08G050800 Gossypium hirsutum HOM05D000697 ORTHO05D000169 1.9e-07 59.7 85 45.9
Gohir.D11G114200 Gossypium hirsutum HOM05D000697 ORTHO05D000169 1.9e-07 59.7 102 40.2
Medtr4g070860 Medicago truncatula HOM05D000697 ORTHO05D000169 1.9e-07 59.7 111 36.9
TPR.G30511 Trifolium pratense HOM05D000697 ORTHO05D000169 1.9e-07 59.7 120 34.2
Ca_20905_v3 Cicer arietinum L. HOM05D000697 ORTHO05D000169 2.4e-07 59.3 110 37.3
Haze_05040 Corylus avellana HOM05D000697 ORTHO05D000169 2.4e-07 59.3 95 46.3
Gohir.A08G040700 Gossypium hirsutum HOM05D000697 ORTHO05D000169 2.4e-07 59.3 88 47.7
Potri.002G196200 Populus trichocarpa HOM05D000697 ORTHO05D000169 2.4e-07 59.3 102 42.2
PGSC0003DMG400016906 Solanum tuberosum HOM05D000697 ORTHO05D000169 2.4e-07 59.3 110 43.6
Thecc.01G313300 Theobroma cacao HOM05D000697 ORTHO05D000169 2.4e-07 59.3 85 44.7
Aa31LG4G5600 Aethionema arabicum HOM05D000697 ORTHO05D000169 3.2e-07 58.9 118 40.7
Haze_01282 Corylus avellana HOM05D000697 ORTHO05D000169 3.2e-07 58.9 95 43.2
Gohir.A03G196600 Gossypium hirsutum HOM05D000697 ORTHO05D000169 3.2e-07 58.9 97 42.3
Nitab4.5_0000368g0110 Nicotiana tabacum HOM05D000697 ORTHO05D000169 3.2e-07 58.9 114 36.8
MD11G1314100 Malus domestica HOM05D000697 ORTHO05D000169 4.2e-07 58.5 94 42.6
Ciclev10007045m.g Citrus clementina HOM05D010937 ORTHO05D012265 5.5e-07 58.2 81 42.0
Gorai.007G122800 Gossypium raimondii HOM05D000697 ORTHO05D000169 5.5e-07 58.2 85 42.4
Hma1.2p1_0212F.1_g089940 Hydrangea macrophylla HOM05D000697 ORTHO05D000169 5.5e-07 58.2 93 44.1
Sabra02G0160900 Salix brachista HOM05D000697 ORTHO05D000169 5.5e-07 58.2 102 42.2
THA.LOC104802154 Tarenaya hassleriana HOM05D000697 ORTHO05D000169 5.5e-07 58.2 82 40.2
VMungo1383G1971 Vigna mungo HOM05D000697 ORTHO05D000169 5.5e-07 58.2 94 44.7
MD03G1295200 Malus domestica HOM05D000697 ORTHO05D000169 7.1e-07 57.8 94 41.5
Manes.01G227900 Manihot esculenta HOM05D000697 ORTHO05D000169 7.1e-07 57.8 95 43.2
Sabra05G0178500 Salix brachista HOM05D000697 ORTHO05D000169 7.1e-07 57.8 105 38.1
Dinv44298 Davidia involucrata HOM05D000697 ORTHO05D000169 9.3e-07 57.4 129 35.7
Peaxi162Scf00673g00034 Petunia axillaris HOM05D000697 ORTHO05D000169 9.3e-07 57.4 114 39.5
PGR044G0370 Punica granatum HOM05D000697 ORTHO05D000169 9.3e-07 57.4 103 41.7
Ah.11g049250 Amaranthus hybridus HOM05D000697 ORTHO05D000169 1.2e-06 57.0 123 35.0
arahy.Tifrunner.gnm1.ann1.76FTKD Arachis hypogaea HOM05D000697 ORTHO05D000169 1.2e-06 57.0 91 42.9
BcaC01g00892 Brassica carinata HOM05D000697 ORTHO05D000169 1.2e-06 57.0 92 42.4
Gohir.A11G110000 Gossypium hirsutum HOM05D000697 ORTHO05D000169 1.2e-06 57.0 92 38.0
Gohir.D03G030500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.2e-06 57.0 85 41.2
Gorai.003G032100 Gossypium raimondii HOM05D000754 ORTHO05D000169 1.2e-06 57.0 85 41.2
arahy.Tifrunner.gnm1.ann1.I8B9P0 Arachis hypogaea HOM05D000697 ORTHO05D000169 1.6e-06 56.6 91 42.9
Lsat_1_v5_gn_7_90381 Lactuca sativa HOM05D000697 ORTHO05D000169 1.6e-06 56.6 101 41.6
Manes.05G003300 Manihot esculenta HOM05D000697 ORTHO05D000169 1.6e-06 56.6 85 41.2
PGSC0003DMG400035130 Solanum tuberosum HOM05D000697 ORTHO05D000169 1.6e-06 56.6 114 39.5
PGSC0003DMG402002771 Solanum tuberosum HOM05D000697 ORTHO05D000169 1.6e-06 56.6 114 39.5
TPR.G32194 Trifolium pratense HOM05D000697 ORTHO05D000169 1.6e-06 56.6 98 40.8
Ah.07g204400 Amaranthus hybridus HOM05D000697 ORTHO05D000169 2.1e-06 56.2 123 36.6
AL7G16620 Arabidopsis lyrata HOM05D000697 ORTHO05D000169 2.1e-06 56.2 114 39.5
CSS0031800 Camellia sinensis var. sinensis HOM05D000697 ORTHO05D000169 2.1e-06 56.2 112 42.0
Ciclev10022730m.g Citrus clementina HOM05D000697 ORTHO05D000169 2.1e-06 56.2 97 43.3
Gohir.A02G149900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.1e-06 56.2 85 41.2
RcHm_v2.0_Chr2g0108691 Rosa chinensis HOM05D000754 ORTHO05D000169 2.1e-06 56.2 90 38.9
THA.LOC104817459 Tarenaya hassleriana HOM05D000697 ORTHO05D000169 2.1e-06 56.2 86 38.4
TPR.G38586 Trifolium pratense HOM05D000697 ORTHO05D000169 2.1e-06 56.2 109 40.4
Atru.chr5.1001 Acer truncatum HOM05D000697 ORTHO05D000169 2.7e-06 55.8 120 39.2
arahy.Tifrunner.gnm1.ann1.449CV2 Arachis hypogaea HOM05D000754 ORTHO05D000169 2.7e-06 55.8 84 40.5
ECA246G1397 Erigeron canadensis HOM05D000697 ORTHO05D000169 2.7e-06 55.8 91 42.9
Thhalv10019604m.g Eutrema salsugineum HOM05D000697 ORTHO05D000169 2.7e-06 55.8 97 42.3
Gohir.D02G217800 Gossypium hirsutum HOM05D000697 ORTHO05D000169 2.7e-06 55.8 97 41.2
Gorai.005G245700 Gossypium raimondii HOM05D000697 ORTHO05D000169 2.7e-06 55.8 97 41.2
Lalb_Chr01g0002341 Lupinus albus HOM05D000697 ORTHO05D000169 2.7e-06 55.8 112 39.3
Lalb_Chr02g0146811 Lupinus albus HOM05D000697 ORTHO05D000169 2.7e-06 55.8 97 40.2
Medtr3g117120 Medicago truncatula HOM05D000697 ORTHO05D000169 2.7e-06 55.8 98 39.8
Psat5g005640 Pisum sativum HOM05D000697 ORTHO05D000169 2.7e-06 55.8 98 39.8
Sabra07G0017000 Salix brachista HOM05D000697 ORTHO05D000169 2.7e-06 55.8 86 47.7
arahy.Tifrunner.gnm1.ann1.EGF22G Arachis hypogaea HOM05D000697 ORTHO05D000169 3.5e-06 55.5 111 36.0
arahy.Tifrunner.gnm1.ann1.JTRU7S Arachis hypogaea HOM05D000754 ORTHO05D000169 3.5e-06 55.5 84 40.5
arahy.Tifrunner.gnm1.ann1.XJ3ZRF Arachis hypogaea HOM05D000697 ORTHO05D000169 3.5e-06 55.5 111 36.0
CAN.G1544.2 Capsicum annuum HOM05D000697 ORTHO05D000169 3.5e-06 55.5 112 39.3
CiPaw.01G299400 Carya illinoinensis HOM05D000697 ORTHO05D000169 3.5e-06 55.5 83 42.2
COL.COLO4_25979 Corchorus olitorius HOM05D000697 ORTHO05D000169 3.5e-06 55.5 95 42.1
FAN23G2905 Fragaria x ananassa HOM05D000754 ORTHO05D000169 3.5e-06 55.5 88 38.6
Glyma.19G216200 Glycine max HOM05D000697 ORTHO05D000169 3.5e-06 55.5 90 41.1
Nitab4.5_0000723g0200 Nicotiana tabacum HOM05D000697 ORTHO05D000169 3.5e-06 55.5 106 37.7
Phvul.001G212800 Phaseolus vulgaris HOM05D000697 ORTHO05D000169 3.5e-06 55.5 94 43.6
SalBow2G3006 Salvia bowleyana HOM05D000697 ORTHO05D000169 3.5e-06 55.5 117 40.2
unitig_736.g22936 Utricularia gibba HOM05D000697 ORTHO05D000169 3.5e-06 55.5 100 42.0
arahy.Tifrunner.gnm1.ann1.6JGL55 Arachis hypogaea HOM05D000697 ORTHO05D000169 4.6e-06 55.1 96 41.7
CANSAT11G1922 Cannabis sativa HOM05D000697 ORTHO05D000169 4.6e-06 55.1 124 37.1
CAN.G1076.3 Capsicum annuum HOM05D000697 ORTHO05D000169 4.6e-06 55.1 114 38.6
Cpa.g.sc538.1 Carica papaya HOM05D000697 ORTHO05D000169 4.6e-06 55.1 112 39.3
COL.COLO4_11611 Corchorus olitorius HOM05D000754 ORTHO05D000169 4.6e-06 55.1 85 38.8
MD15G1300200 Malus domestica HOM05D000754 ORTHO05D000169 4.6e-06 55.1 85 37.6
Nn4g25598 Nelumbo nucifera HOM05D000697 ORTHO05D000169 4.6e-06 55.1 100 40.0
Nitab4.5_0007454g0020 Nicotiana tabacum HOM05D000697 ORTHO05D000169 4.6e-06 55.1 113 38.9
Peaxi162Scf00016g00411 Petunia axillaris HOM05D000697 ORTHO05D000169 4.6e-06 55.1 112 39.3
Psat7g140160 Pisum sativum HOM05D000697 ORTHO05D000169 4.6e-06 55.1 84 38.1
Potri.007G019900 Populus trichocarpa HOM05D000697 ORTHO05D000169 4.6e-06 55.1 86 47.7
Solyc01g109880.3 Solanum lycopersicum HOM05D000697 ORTHO05D000169 4.6e-06 55.1 112 38.4
Sopen01g052070 Solanum pennellii HOM05D000697 ORTHO05D000169 4.6e-06 55.1 112 38.4
Aa31LG2G15920 Aethionema arabicum HOM05D000697 ORTHO05D000169 6.0e-06 54.7 100 39.0
Dinv15190 Davidia involucrata HOM05D001712 ORTHO05D001731 6.0e-06 54.7 90 40.0
Migut.D00084 Erythranthe guttata HOM05D000697 ORTHO05D000169 6.0e-06 54.7 89 40.4
FAN26G0075 Fragaria x ananassa HOM05D000754 ORTHO05D000169 6.0e-06 54.7 83 38.6
Glyma.03G219300 Glycine max HOM05D000697 ORTHO05D000169 6.0e-06 54.7 90 40.0
Lalb_Chr22g0354591 Lupinus albus HOM05D000697 ORTHO05D000169 6.0e-06 54.7 97 42.3
Nitab4.5_0007928g0020 Nicotiana tabacum HOM05D000697 ORTHO05D000169 6.0e-06 54.7 88 44.3
Potri.007G006900 Populus trichocarpa HOM05D000754 ORTHO05D000169 6.0e-06 54.7 85 37.6
Sabra04G0105600 Salix brachista HOM05D000697 ORTHO05D000169 6.0e-06 54.7 124 37.1
Sc25g0003320 Simmondsia chinensis HOM05D000697 ORTHO05D000169 6.0e-06 54.7 91 40.7
PGSC0003DMG400030946 Solanum tuberosum HOM05D000697 ORTHO05D000169 6.0e-06 54.7 112 38.4
TAR365G0994 Trochodendron aralioides HOM05D000697 ORTHO05D000169 6.0e-06 54.7 105 37.1
unitig_60.g25656 Utricularia gibba HOM05D000697 ORTHO05D000169 6.0e-06 54.7 89 40.4
EL10Ac3g05169 Beta vulgaris HOM05D000697 ORTHO05D000169 7.9e-06 54.3 85 40.0
CDE08G1122 Ceratophyllum demersum HOM05D000697 ORTHO05D000169 7.9e-06 54.3 116 37.9
Lsat_1_v5_gn_4_136921 Lactuca sativa HOM05D000697 ORTHO05D000169 7.9e-06 54.3 96 43.8
Lsat_1_v5_gn_5_26620 Lactuca sativa HOM05D000697 ORTHO05D000169 7.9e-06 54.3 96 43.8
Lalb_Chr16g0378971 Lupinus albus HOM05D000754 ORTHO05D000169 7.9e-06 54.3 79 36.7
MD02G1189300 Malus domestica HOM05D000754 ORTHO05D000169 7.9e-06 54.3 85 37.6
Nitab4.5_0003894g0010 Nicotiana tabacum HOM05D000697 ORTHO05D000169 7.9e-06 54.3 105 35.2
PSO170G1051 Papaver somniferum HOM05D000697 ORTHO05D000169 7.9e-06 54.3 102 35.3
Psat6g009600 Pisum sativum HOM05D000697 ORTHO05D000169 7.9e-06 54.3 83 44.6
QL06p011768 Quercus lobata HOM05D000697 ORTHO05D000169 7.9e-06 54.3 84 44.0
TPR.G4035 Trifolium pratense HOM05D000697 ORTHO05D000169 7.9e-06 54.3 96 43.8
HPP92_003568 Vanilla planifolia HOM05D000697 ORTHO05D000169 7.9e-06 54.3 87 41.4


User provided reference genes

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