Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G7450 Aethionema arabicum HOM05D000448 ORTHO05D000291 2.5e-50 201.8 102 100.0
Aa31LG10G810 Aethionema arabicum HOM05D000448 ORTHO05D000291 1.2e-31 139.8 108 69.4
Aa31LG10G1220 Aethionema arabicum HOM05D000448 ORTHO05D000291 7.0e-29 130.6 103 64.1
Aa31LG2G18310 Aethionema arabicum HOM05D000448 ORTHO05D000291 1.2e-20 103.2 98 51.0
Sp3g12190 Schrenkiella parvula HOM05D000448 ORTHO05D000291 1.2e-20 103.2 99 53.5
BcaC06g34956 Brassica carinata HOM05D000448 ORTHO05D000291 1.6e-20 102.8 98 52.0
BolC7t42665H Brassica oleracea HOM05D000448 ORTHO05D000291 1.6e-20 102.8 98 52.0
Aa31LG8G1140 Aethionema arabicum HOM05D000448 ORTHO05D000291 4.5e-20 101.3 96 50.0
C05p53780 Brassica napus HOM05D000448 ORTHO05D000291 7.8e-20 100.5 99 50.5
AL3G26140 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 1.3e-19 99.8 101 49.5
AL795U10010 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 1.3e-19 99.8 101 49.5
A05p35470 Brassica napus HOM05D000448 ORTHO05D000291 1.3e-19 99.8 99 50.5
BolC5t34046H Brassica oleracea HOM05D000448 ORTHO05D000291 1.3e-19 99.8 99 50.5
BraA05t22357Z Brassica rapa HOM05D000448 ORTHO05D000291 1.3e-19 99.8 99 50.5
Thhalv10022156m.g Eutrema salsugineum HOM05D000448 ORTHO05D000291 1.3e-19 99.8 96 51.0
CARHR088760 Cardamine hirsuta HOM05D000448 ORTHO05D000291 2.9e-19 98.6 99 51.5
CARHR256100 Cardamine hirsuta HOM05D000448 ORTHO05D000291 2.9e-19 98.6 96 47.9
AT3G13950 Arabidopsis thaliana HOM05D000448 ORTHO05D000291 3.8e-19 98.2 99 50.5
BcaB06g25417 Brassica carinata HOM05D000448 ORTHO05D000291 5.0e-19 97.8 99 50.5
BcaC07g39158 Brassica carinata HOM05D000448 ORTHO05D000291 1.5e-18 96.3 96 47.9
C08p21510 Brassica napus HOM05D000448 ORTHO05D000291 1.5e-18 96.3 96 47.9
BolC8t49791H Brassica oleracea HOM05D000448 ORTHO05D000291 1.5e-18 96.3 96 47.9
Carub.0003s1352 Capsella rubella HOM05D000448 ORTHO05D000291 1.9e-18 95.9 96 52.1
BcaB03g11909 Brassica carinata HOM05D000448 ORTHO05D000291 5.6e-18 94.4 92 48.9
Aa31LG10G13200 Aethionema arabicum HOM05D000448 ORTHO05D000291 1.2e-17 93.2 103 48.5
THA.LOC104810361 Tarenaya hassleriana HOM05D000448 ORTHO05D000291 1.2e-17 93.2 108 43.5
THA.LOC104815630 Tarenaya hassleriana HOM05D000448 ORTHO05D000291 1.6e-17 92.8 111 46.8
Aa31LG1G8810 Aethionema arabicum HOM05D000448 ORTHO05D000291 3.6e-17 91.7 101 44.6
AT4G13266 Arabidopsis thaliana HOM05D000448 ORTHO05D000291 6.1e-17 90.9 101 43.6
Carub.0007s2994 Capsella rubella HOM05D000448 ORTHO05D000291 8.9e-16 87.0 98 44.9
AL9U10580 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 1.5e-15 86.3 100 44.0
A08p28540 Brassica napus HOM05D000448 ORTHO05D000291 9.2e-13 77.0 97 47.4
BraA08t34782Z Brassica rapa HOM05D000448 ORTHO05D000291 1.2e-12 76.6 97 46.4
Aa31LG7G11610 Aethionema arabicum HOM05D000448 ORTHO05D000291 3.5e-12 75.1 87 48.3
BcaB03g14211 Brassica carinata HOM05D000448 ORTHO05D000291 3.5e-12 75.1 84 44.0
BolC1t05014H Brassica oleracea HOM05D000448 ORTHO05D000291 8.6e-11 70.5 76 48.7
C01p50650 Brassica napus HOM05D000448 ORTHO05D000291 1.5e-10 69.7 76 48.7
Cpa.g.sc25.92 Carica papaya HOM05D000448 ORTHO05D000291 1.9e-10 69.3 90 43.3
Psat3g083880 Pisum sativum HOM05D000448 ORTHO05D000291 1.6e-09 66.2 104 36.5
MD02G1085900 Malus domestica HOM05D000448 ORTHO05D000291 2.8e-09 65.5 92 35.9
THA.LOC104822652 Tarenaya hassleriana HOM05D000448 ORTHO05D000291 2.8e-09 65.5 101 35.6
PGR142G3845 Punica granatum HOM05D000448 ORTHO05D000291 3.6e-09 65.1 95 35.8
THA.LOC104822771 Tarenaya hassleriana HOM05D000448 ORTHO05D000291 3.6e-09 65.1 101 35.6
Duzib192G1008 Durio zibethinus HOM05D000448 ORTHO05D000291 6.2e-09 64.3 100 38.0
Medtr7g087540 Medicago truncatula HOM05D000448 ORTHO05D000291 6.2e-09 64.3 104 35.6
Rhsim05G0013100 Rhododendron simsii HOM05D000448 ORTHO05D000291 6.2e-09 64.3 94 36.2
THA.LOC104822653 Tarenaya hassleriana HOM05D000448 ORTHO05D000291 8.0e-09 63.9 101 35.6
Actinidia25224 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.4e-08 63.2 94 34.0
AUR62025966 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.3e-08 62.4 101 34.7
QL02p061270 Quercus lobata HOM05D000448 ORTHO05D000291 2.3e-08 62.4 97 33.0
Duzib168G1606 Durio zibethinus HOM05D000448 ORTHO05D000291 3.1e-08 62.0 94 34.0
Lj3g0007023 Lotus japonicus HOM05D000448 ORTHO05D000291 3.1e-08 62.0 100 37.0
MD15G1053400 Malus domestica HOM05D000448 ORTHO05D000291 4.0e-08 61.6 95 32.6
Nn6g35571 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.0e-08 61.6 97 34.0
THA.LOC104822645 Tarenaya hassleriana HOM05D000448 ORTHO05D000291 4.0e-08 61.6 101 34.7
QL02p061382 Quercus lobata HOM05D000448 ORTHO05D000291 5.2e-08 61.2 94 33.0
QL02p061422 Quercus lobata HOM05D000448 ORTHO05D000291 5.2e-08 61.2 94 34.0
SalBow4G2869 Salvia bowleyana HOM05D000448 ORTHO05D000291 5.2e-08 61.2 97 35.1
arahy.Tifrunner.gnm1.ann1.ZI8BLB Arachis hypogaea HOM05D000448 ORTHO05D000291 6.8e-08 60.8 103 32.0
Migut.L01539 Erythranthe guttata HOM05D000448 ORTHO05D000291 6.8e-08 60.8 92 34.8
Lalb_Chr01g0015511 Lupinus albus HOM05D000448 ORTHO05D000291 6.8e-08 60.8 95 37.9
Oeu010820.1 Olea europaea HOM05D000448 ORTHO05D000291 6.8e-08 60.8 94 33.0
Sopen08g017860 Solanum pennellii HOM05D000448 ORTHO05D000291 6.8e-08 60.8 96 32.3
THA.LOC104822772 Tarenaya hassleriana HOM05D000448 ORTHO05D000291 6.8e-08 60.8 101 34.7
Thecc.09G059700 Theobroma cacao HOM05D000448 ORTHO05D000291 6.8e-08 60.8 94 34.0
arahy.Tifrunner.gnm1.ann1.PR1UBX Arachis hypogaea HOM05D000448 ORTHO05D000291 8.9e-08 60.5 103 33.0
Migut.A00096 Erythranthe guttata HOM05D000448 ORTHO05D000291 8.9e-08 60.5 95 34.7
CANSAT25G3158 Cannabis sativa HOM05D000448 ORTHO05D000291 1.2e-07 60.1 99 30.3
Prupe.1G407000 Prunus persica HOM05D000448 ORTHO05D000291 1.2e-07 60.1 94 33.0
Duzib150G0219 Durio zibethinus HOM05D000448 ORTHO05D000291 1.5e-07 59.7 94 33.0
FvH4_2g31340 Fragaria vesca HOM05D000448 ORTHO05D000291 1.5e-07 59.7 95 30.5
FAN20G0495 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.5e-07 59.7 95 30.5
FAN24G3054 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.5e-07 59.7 95 30.5
FAN27G1920 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.5e-07 59.7 95 30.5
Solyc08g062330.3 Solanum lycopersicum HOM05D000448 ORTHO05D000291 1.5e-07 59.7 96 33.3
CSS0037448 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.0e-07 59.3 100 35.0
CiPaw.04G146800 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.0e-07 59.3 92 33.7
COL.COLO4_30786 Corchorus olitorius HOM05D000448 ORTHO05D000291 2.0e-07 59.3 95 36.8
MD08G1068900 Malus domestica HOM05D000448 ORTHO05D000291 2.0e-07 59.3 95 31.6
MD15G1213100 Malus domestica HOM05D000448 ORTHO05D000291 2.0e-07 59.3 92 33.7
Carub.0007s2992 Capsella rubella HOM05D000448 ORTHO05D000291 2.6e-07 58.9 80 38.8
Migut.A00098 Erythranthe guttata HOM05D000448 ORTHO05D000291 2.6e-07 58.9 98 33.7
Hma1.2p1_0231F.1_g097530 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.6e-07 58.9 99 32.3
Hma1.2p1_0231F.1_g097610 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.6e-07 58.9 99 32.3
Hma1.2p1_0231F.1_g097613 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.6e-07 58.9 99 32.3
Hma1.2p1_0732F.1_g210020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.6e-07 58.9 95 34.7
Nn3g19311 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.6e-07 58.9 100 34.0
TPR.G23650 Trifolium pratense HOM05D000448 ORTHO05D000291 2.6e-07 58.9 99 34.3
TAR383G0082 Trochodendron aralioides HOM05D000448 ORTHO05D000291 2.6e-07 58.9 92 34.8
Actinidia27564 Actinidia chinensis HOM05D000448 ORTHO05D000291 3.4e-07 58.5 99 34.3
MSTRG.12046 Avicennia marina HOM05D000448 ORTHO05D000291 3.4e-07 58.5 98 33.7
Lj7C682G5 Lonicera japonica HOM05D000544 ORTHO05D000291 3.4e-07 58.5 94 34.0
Thecc.09G081800 Theobroma cacao HOM05D000448 ORTHO05D000291 3.4e-07 58.5 94 31.9
Cfa019709 Carpinus fangiana HOM05D000448 ORTHO05D000291 4.4e-07 58.2 96 38.5
TPR.G23679 Trifolium pratense HOM05D000448 ORTHO05D000291 4.4e-07 58.2 100 35.0
TPR.G7562 Trifolium pratense HOM05D000448 ORTHO05D000291 4.4e-07 58.2 100 37.0
CiPaw.03G111300 Carya illinoinensis HOM05D000448 ORTHO05D000291 5.8e-07 57.8 97 37.1
Cc02_g31560 Coffea canephora HOM05D000448 ORTHO05D000291 5.8e-07 57.8 100 30.0
Cc06_g19840 Coffea canephora HOM05D000448 ORTHO05D000291 5.8e-07 57.8 97 33.0
Cc08_g01420 Coffea canephora HOM05D000448 ORTHO05D000291 5.8e-07 57.8 100 30.0
FAN15G3761 Fragaria x ananassa HOM05D000448 ORTHO05D000291 5.8e-07 57.8 95 29.5
Hma1.2p1_2573F.1_g324630 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 5.8e-07 57.8 95 35.8
QL05p008866 Quercus lobata HOM05D000448 ORTHO05D000291 5.8e-07 57.8 97 34.0
QL05p008953 Quercus lobata HOM05D000448 ORTHO05D000291 5.8e-07 57.8 93 35.5
RcHm_v2.0_Chr2g0094201 Rosa chinensis HOM05D000448 ORTHO05D000291 5.8e-07 57.8 92 31.5
RcHm_v2.0_Chr6g0311481 Rosa chinensis HOM05D000448 ORTHO05D000291 5.8e-07 57.8 92 30.4
TPR.G23655 Trifolium pratense HOM05D000448 ORTHO05D000291 5.8e-07 57.8 103 35.0
COL.COLO4_21112 Corchorus olitorius HOM05D000448 ORTHO05D000291 7.5e-07 57.4 97 30.9
Hma1.2p1_0196F.1_g085070 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 7.5e-07 57.4 100 36.0
Hma1.2p1_0231F.1_g097550 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 7.5e-07 57.4 99 34.3
Lalb_Chr25g0289651 Lupinus albus HOM05D000448 ORTHO05D000291 7.5e-07 57.4 92 35.9
SGA_v2.0_scaffold64G21858 Striga asiatica HOM05D000448 ORTHO05D000291 7.5e-07 57.4 99 33.3
Aa31sc1937G10 Aethionema arabicum HOM05D000448 ORTHO05D000291 9.8e-07 57.0 74 37.8
Aa31sc2154G10 Aethionema arabicum HOM05D000448 ORTHO05D000291 9.8e-07 57.0 74 37.8
MSTRG.12044 Avicennia marina HOM05D000448 ORTHO05D000291 9.8e-07 57.0 98 34.7
Cfa019118 Carpinus fangiana HOM05D000448 ORTHO05D000291 9.8e-07 57.0 96 37.5
CiPaw.03G112000 Carya illinoinensis HOM05D000448 ORTHO05D000291 9.8e-07 57.0 93 32.3
Ciclev10027103m.g Citrus clementina HOM05D000448 ORTHO05D000291 9.8e-07 57.0 97 38.1
Eucgr.C03371 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.8e-07 57.0 100 35.0
HanXRQChr12g0358831 Helianthus annuus HOM05D000448 ORTHO05D000291 9.8e-07 57.0 97 30.9
SalBow1G7265 Salvia bowleyana HOM05D000448 ORTHO05D000291 9.8e-07 57.0 97 27.8
Migut.A00934 Erythranthe guttata HOM05D000448 ORTHO05D000291 1.3e-06 56.6 95 33.7
SalBow4G0505 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.3e-06 56.6 97 34.0
PGSC0003DMG400013763 Solanum tuberosum HOM05D000448 ORTHO05D000291 1.3e-06 56.6 96 35.4
Actinidia25704 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.7e-06 56.2 99 33.3
CSS0014567 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.7e-06 56.2 100 33.0
Sed0015187 Sechium edule HOM05D000448 ORTHO05D000291 1.7e-06 56.2 98 33.7
Sopen08g017880 Solanum pennellii HOM05D000448 ORTHO05D000291 1.7e-06 56.2 99 34.3
TAR626G0212 Trochodendron aralioides HOM05D003596 ORTHO05D004256 1.7e-06 56.2 95 35.8
vmacro03798 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.7e-06 56.2 96 36.5
GSVIVG01015139001 Vitis vinifera HOM05D000448 ORTHO05D000291 1.7e-06 56.2 95 32.6
CiPaw.15G088600 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.2e-06 55.8 94 30.9
Cc06_g19850 Coffea canephora HOM05D000448 ORTHO05D000291 2.2e-06 55.8 98 33.7
Glyma.13G130300 Glycine max HOM05D000448 ORTHO05D000291 2.2e-06 55.8 97 36.1
Gohir.D05G139266 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.2e-06 55.8 97 36.1
Hma1.2p1_2021F.1_g311300 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.2e-06 55.8 104 31.7
Phvul.007G156400 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 2.2e-06 55.8 97 34.0
Sc23g0005360 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.2e-06 55.8 97 32.0
Solyc08g062360.3 Solanum lycopersicum HOM05D000448 ORTHO05D000291 2.2e-06 55.8 99 34.3
Cpa.g.sc277.6 Carica papaya HOM05D000448 ORTHO05D000291 2.9e-06 55.5 92 37.0
CsaV3_3G043590 Cucumis sativus L. HOM05D000448 ORTHO05D000291 2.9e-06 55.5 97 34.0
Gorai.010G097800 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.9e-06 55.5 95 34.7
Lsat_1_v5_gn_5_78720 Lactuca sativa HOM05D000448 ORTHO05D000291 2.9e-06 55.5 97 30.9
TAR628G1068 Trochodendron aralioides HOM05D000448 ORTHO05D000291 2.9e-06 55.5 94 31.9
TAR636G1885 Trochodendron aralioides HOM05D000448 ORTHO05D000291 2.9e-06 55.5 94 31.9
Ah.16g105930 Amaranthus hybridus HOM05D000448 ORTHO05D000291 3.7e-06 55.1 93 35.5
Sc23g0005330 Simmondsia chinensis HOM05D000448 ORTHO05D000291 3.7e-06 55.1 97 32.0
CANSAT11G0836 Cannabis sativa HOM05D000448 ORTHO05D000291 4.9e-06 54.7 101 33.7
Rhsim07G0188200 Rhododendron simsii HOM05D000448 ORTHO05D000291 4.9e-06 54.7 95 32.6
CAN.G712.1 Capsicum annuum HOM05D000448 ORTHO05D000291 6.4e-06 54.3 96 32.3
Migut.A00095 Erythranthe guttata HOM05D000448 ORTHO05D000291 6.4e-06 54.3 97 37.1
Medtr1g069110 Medicago truncatula HOM05D000448 ORTHO05D000291 6.4e-06 54.3 96 36.5
Psat6g065480 Pisum sativum HOM05D000448 ORTHO05D000291 6.4e-06 54.3 100 33.0
PGR142G2126 Punica granatum HOM05D000448 ORTHO05D000291 6.4e-06 54.3 93 36.6
COL.COLO4_30724 Corchorus olitorius HOM05D000448 ORTHO05D000291 8.3e-06 53.9 92 34.8
Nitab4.5_0000286g0030 Nicotiana tabacum HOM05D000448 ORTHO05D000291 8.3e-06 53.9 96 32.3
Oeu034188.1 Olea europaea HOM05D000448 ORTHO05D000291 8.3e-06 53.9 97 34.0
Sed0014154 Sechium edule HOM05D000448 ORTHO05D000291 8.3e-06 53.9 100 32.0


User provided reference genes

Program Settings