Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G7240 Aethionema arabicum HOM05D003709 ORTHO05D004364 1.0e-111 406.8 203 100.0
Aa31sc52G10 Aethionema arabicum HOM05D003709 ORTHO05D004364 1.1e-44 184.1 93 98.9
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 2.1e-37 159.8 114 70.2
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 6.2e-37 158.3 93 82.8
AL6G16240 Arabidopsis lyrata HOM05D003709 ORTHO05D004364 1.8e-36 156.8 110 70.9
AT5G06240 Arabidopsis thaliana HOM05D003709 ORTHO05D004364 6.9e-36 154.8 93 80.6
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 1.2e-35 154.1 110 69.1
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 1.2e-35 154.1 110 69.1
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 1.5e-35 153.7 110 69.1
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 1.5e-35 153.7 110 69.1
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 1.5e-35 153.7 110 69.1
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 1.5e-35 153.7 110 69.1
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 2.6e-35 152.9 110 68.2
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 4.5e-35 152.1 114 68.4
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 4.5e-35 152.1 114 68.4
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 5.8e-35 151.8 117 65.8
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 5.8e-35 151.8 117 65.8
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 5.8e-35 151.8 114 65.8
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.9e-34 148.7 120 64.2
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.4e-34 147.9 120 64.2
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.9e-33 146.7 120 63.3
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 2.5e-33 146.4 93 76.3
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 1.6e-32 143.7 116 64.7
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 2.7e-32 142.9 119 60.5
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 4.6e-32 142.1 113 65.5
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 4.6e-32 142.1 112 68.8
Gorai.004G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 7.9e-32 141.4 119 61.3
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 1.0e-31 141.0 121 65.3
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.0e-31 141.0 92 77.2
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 1.8e-31 140.2 119 63.9
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 3.0e-31 139.4 118 61.0
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 3.9e-31 139.0 112 67.9
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.9e-31 139.0 95 73.7
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 5.1e-31 138.7 96 74.0
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 6.7e-31 138.3 111 65.8
AUR62006246 Chenopodium quinoa HOM05D003709 ORTHO05D004364 6.7e-31 138.3 104 65.4
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 8.7e-31 137.9 118 62.7
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 8.7e-31 137.9 95 73.7
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 1.1e-30 137.5 115 65.2
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 1.1e-30 137.5 119 62.2
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 1.5e-30 137.1 118 62.7
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 1.5e-30 137.1 123 59.3
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 1.5e-30 137.1 96 71.9
AUR62028486 Chenopodium quinoa HOM05D003709 ORTHO05D004364 1.9e-30 136.7 116 59.5
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 2.5e-30 136.3 117 62.4
Gohir.A01G177700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.5e-30 136.3 112 61.6
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 2.5e-30 136.3 96 71.9
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 2.5e-30 136.3 96 70.8
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 2.5e-30 136.3 112 65.2
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 2.5e-30 136.3 118 59.3
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 2.5e-30 136.3 119 59.7
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 3.3e-30 136.0 112 65.2
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 3.3e-30 136.0 103 68.0
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 3.3e-30 136.0 96 70.8
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 3.3e-30 136.0 116 62.9
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 4.3e-30 135.6 94 72.3
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 4.3e-30 135.6 94 72.3
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 4.3e-30 135.6 103 68.0
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 4.3e-30 135.6 118 60.2
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 4.3e-30 135.6 111 63.1
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 4.3e-30 135.6 96 69.8
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 4.3e-30 135.6 119 60.5
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 5.7e-30 135.2 91 75.8
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 7.4e-30 134.8 114 64.0
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 7.4e-30 134.8 113 62.8
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 7.4e-30 134.8 113 62.8
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 7.4e-30 134.8 113 62.8
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 9.6e-30 134.4 120 61.7
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 9.6e-30 134.4 113 62.8
Gohir.A10G101550 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.6e-30 134.4 112 61.6
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 9.6e-30 134.4 113 62.8
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 9.6e-30 134.4 114 63.2
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 9.6e-30 134.4 116 60.3
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 9.6e-30 134.4 114 63.2
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 1.3e-29 134.0 120 61.7
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 1.3e-29 134.0 118 61.0
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 1.3e-29 134.0 96 70.8
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 1.6e-29 133.7 113 61.9
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 1.6e-29 133.7 114 60.5
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 1.6e-29 133.7 93 73.1
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 2.1e-29 133.3 103 67.0
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 2.8e-29 132.9 117 59.8
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 2.8e-29 132.9 94 71.3
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 3.7e-29 132.5 119 58.0
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 4.8e-29 132.1 125 59.2
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 4.8e-29 132.1 112 61.6
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 4.8e-29 132.1 112 59.8
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 6.3e-29 131.7 96 69.8
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 6.3e-29 131.7 96 68.8
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 6.3e-29 131.7 112 62.5
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 6.3e-29 131.7 112 60.7
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 8.2e-29 131.3 96 67.7
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 8.2e-29 131.3 96 67.7
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 1.1e-28 131.0 117 59.0
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 1.1e-28 131.0 91 73.6
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 1.4e-28 130.6 112 58.9
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 1.4e-28 130.6 115 61.7
Gohir.A13G149700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.4e-28 130.6 119 57.1
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 1.4e-28 130.6 115 61.7
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 1.8e-28 130.2 119 60.5
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 2.4e-28 129.8 119 58.8
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 3.1e-28 129.4 120 60.0
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 4.1e-28 129.0 121 57.9
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 5.3e-28 128.6 90 74.4
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 5.3e-28 128.6 113 62.8
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 5.3e-28 128.6 107 61.7
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 6.9e-28 128.3 119 57.1
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 6.9e-28 128.3 111 60.4
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 1.5e-27 127.1 97 67.0
arahy.Tifrunner.gnm1.ann1.VRIY4R Arachis hypogaea HOM05D003709 ORTHO05D004364 2.0e-27 126.7 98 67.3
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 2.0e-27 126.7 97 69.1
arahy.Tifrunner.gnm1.ann1.K65CIQ Arachis hypogaea HOM05D003709 ORTHO05D004364 1.3e-26 124.0 95 69.5
Zm00001eb266720 Zea mays HOM05D003709 ORTHO05D004364 8.4e-26 121.3 110 59.1
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 1.1e-25 120.9 115 58.3
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 3.2e-25 119.4 150 50.0
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.2e-24 117.5 96 63.5
TAR623G0195 Trochodendron aralioides HOM05D003709 ORTHO05D004364 1.2e-24 117.5 102 59.8
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 7.9e-24 114.8 142 48.6
Dinv21156 Davidia involucrata HOM05D003709 ORTHO05D004364 1.3e-23 114.0 109 57.8
ATR0315G087 Amborella trichopoda HOM05D003709 ORTHO05D004364 1.5e-22 110.5 94 60.6
Hma1.2p1_2017F.1_g311180 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 2.5e-22 109.8 159 43.4
Os05g0112750 Oryza sativa ssp. japonica HOM05D003709 ORTHO05D004364 3.3e-22 109.4 98 56.1
unitig_744.g24704 Utricularia gibba HOM05D003709 ORTHO05D004364 3.3e-22 109.4 121 50.4
Haze_19660 Corylus avellana HOM05D003709 ORTHO05D004364 1.1e-20 104.4 143 46.9
Hund28303 Selenicereus undatus HOM05D003709 ORTHO05D004364 1.1e-20 104.4 84 67.9
Gohir.D04G000040 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.4e-19 99.4 114 49.1
Hund28305 Selenicereus undatus HOM05D003709 ORTHO05D004364 5.9e-19 98.6 84 63.1
Gohir.D02G000500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.4e-17 94.0 105 49.5
Manes.09G051450 Manihot esculenta HOM05D003709 ORTHO05D004364 7.2e-17 91.7 74 62.2
Nn2g14234 Nelumbo nucifera HOM05D003709 ORTHO05D004364 3.9e-15 85.9 80 57.5
Pp3c3_9770 Physcomitrium patens HOM05D003709 ORTHO05D004364 6.7e-15 85.1 95 51.6
Gohir.A12G074200 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.0e-14 83.6 119 42.0
Peaxi162Scf00013g00154 Petunia axillaris HOM05D003709 ORTHO05D004364 3.3e-14 82.8 93 48.4
Gohir.A09G000259 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.3e-13 80.9 67 59.7
Gohir.D01G158750 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.7e-13 80.5 87 52.9
Mapoly0009s0017 Marchantia polymorpha HOM05D003709 ORTHO05D004364 1.7e-13 80.5 97 48.5
Gorai.006G066600 Gossypium raimondii HOM05D003709 ORTHO05D004364 6.3e-13 78.6 64 59.4
COL.COLO4_29661 Corchorus olitorius HOM05D003709 ORTHO05D004364 1.4e-12 77.4 66 57.6
AagrBONN_evm.TU.Sc2ySwM_228.2513 Anthoceros agrestis HOM05D003709 ORTHO05D004364 2.4e-12 76.6 98 40.8
Gohir.D02G000150 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.1e-12 76.3 76 50.0
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.5e-11 73.9 68 55.9
Gohir.A03G211700 Gossypium hirsutum HOM05D001759 ORTHO05D004364 2.0e-11 73.6 41 80.5
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.9e-11 72.0 68 54.4
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 1.3e-10 70.9 54 66.7
CBR_g45657 Chara braunii HOM05D003709 ORTHO05D004364 1.7e-10 70.5 103 42.7
Gohir.D11G326500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.2e-10 70.1 56 60.7
C03p03020 Brassica napus HOM05D003709 ORTHO05D004364 3.8e-10 69.3 41 75.6
AUR62028484 Chenopodium quinoa HOM05D003709 ORTHO05D138253 6.5e-10 68.6 53 62.3
AUR62028485 Chenopodium quinoa HOM05D003709 ORTHO05D004364 6.5e-10 68.6 53 62.3
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 8.5e-10 68.2 65 55.4
Haze_10129 Corylus avellana HOM05D003709 ORTHO05D004364 2.5e-09 66.6 98 41.8
Potri.006G208200 Populus trichocarpa HOM05D003709 ORTHO05D004364 2.5e-09 66.6 48 68.8
Gohir.A11G282813 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.2e-09 66.2 37 86.5
Haze_00443 Corylus avellana HOM05D000273 ORTHO05D000198 9.4e-09 64.7 92 42.4
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.6e-08 63.9 54 61.1
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.6e-08 63.9 54 61.1
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.6e-08 63.9 54 61.1
SMO197G0068 Selaginella moellendorffii HOM05D003709 ORTHO05D004364 2.1e-08 63.5 103 34.0
Haze_09934 Corylus avellana HOM05D003709 ORTHO05D004364 4.7e-08 62.4 61 57.4
Lalb_Chr25g0288191 Lupinus albus HOM05D003709 ORTHO05D004364 4.7e-08 62.4 58 53.4
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 4.7e-08 62.4 53 56.6
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 6.1e-08 62.0 54 59.3
Gohir.A01G093450 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.0e-07 61.2 58 51.7
Gohir.A01G093475 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.0e-07 61.2 58 51.7
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.0e-07 61.2 39 69.2
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-07 60.8 36 75.0
Gohir.1Z049729 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.8e-07 60.5 39 69.2
Gohir.D04G000065 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.8e-07 60.5 39 69.2
MD07G1268900 Malus domestica HOM05D003709 ORTHO05D004364 1.8e-07 60.5 56 60.7
Gohir.A06G142750 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.9e-07 59.3 55 50.9
MD13G1200900 Malus domestica HOM05D003709 ORTHO05D004364 5.1e-07 58.9 54 55.6
SGA_v2.0_scaffold123G33400 Striga asiatica HOM05D003709 ORTHO05D004364 6.7e-07 58.5 48 62.5
arahy.Tifrunner.gnm1.ann1.PZI97L Arachis hypogaea HOM05D003709 ORTHO05D004364 1.5e-06 57.4 56 57.1
Gohir.1Z049623 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-06 57.4 29 86.2
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-06 57.4 35 71.4
ClCG10G018670 Citrullus lanatus HOM05D003709 ORTHO05D004364 5.7e-06 55.5 27 88.9


User provided reference genes

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