Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G7230 Aethionema arabicum HOM05D003709 ORTHO05D004364 2.8e-28 127.9 62 100.0
Aa31sc52G10 Aethionema arabicum HOM05D003709 ORTHO05D004364 5.2e-19 97.1 47 95.7
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 2.0e-18 95.1 47 93.6
AL6G16240 Arabidopsis lyrata HOM05D003709 ORTHO05D004364 2.6e-18 94.7 47 91.5
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 2.6e-18 94.7 47 91.5
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 2.6e-18 94.7 47 91.5
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 2.6e-18 94.7 47 91.5
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 2.6e-18 94.7 47 91.5
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 2.6e-18 94.7 47 91.5
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 9.8e-18 92.8 47 89.4
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 9.8e-18 92.8 47 89.4
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 9.8e-18 92.8 47 89.4
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 9.8e-18 92.8 47 89.4
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 9.8e-18 92.8 47 89.4
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 9.8e-18 92.8 47 89.4
AT5G06240 Arabidopsis thaliana HOM05D003709 ORTHO05D004364 2.2e-17 91.7 47 89.4
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 2.9e-17 91.3 47 89.4
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 4.9e-17 90.5 47 85.1
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 4.9e-17 90.5 47 85.1
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 4.9e-17 90.5 47 85.1
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 1.1e-16 89.4 47 83.0
Gohir.1Z049340 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.4e-16 88.2 61 68.9
Gohir.D03G178450 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.4e-16 88.2 61 68.9
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 2.4e-16 88.2 47 85.1
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 3.2e-16 87.8 47 85.1
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 3.2e-16 87.8 47 85.1
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 3.2e-16 87.8 47 85.1
Gorai.013G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 3.2e-16 87.8 61 67.2
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 4.1e-16 87.4 47 83.0
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 5.4e-16 87.0 47 85.1
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 5.4e-16 87.0 47 83.0
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 5.4e-16 87.0 47 83.0
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 7.0e-16 86.7 47 83.0
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Gohir.1Z049623 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 9.2e-16 86.3 57 70.2
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 9.2e-16 86.3 47 80.9
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 1.2e-15 85.9 47 83.0
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 1.6e-15 85.5 47 80.9
Gohir.D04G000065 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.6e-15 85.5 57 68.4
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 1.6e-15 85.5 47 80.9
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 1.6e-15 85.5 47 80.9
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 2.0e-15 85.1 47 78.7
Gohir.D13G000580 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.0e-15 85.1 61 65.6
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 2.7e-15 84.7 47 80.9
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 2.7e-15 84.7 47 78.7
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 2.7e-15 84.7 47 80.9
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 4.6e-15 84.0 47 85.1
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 4.6e-15 84.0 47 80.9
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 4.6e-15 84.0 47 76.6
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 4.6e-15 84.0 47 80.9
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 4.6e-15 84.0 47 80.9
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 4.6e-15 84.0 47 78.7
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 6.0e-15 83.6 47 80.9
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 6.0e-15 83.6 47 74.5
Gohir.D11G326500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.0e-15 83.6 47 80.9
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 6.0e-15 83.6 47 80.9
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 6.0e-15 83.6 47 74.5
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 6.0e-15 83.6 47 80.9
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 7.8e-15 83.2 47 78.7
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 7.8e-15 83.2 47 76.6
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 7.8e-15 83.2 47 76.6
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.0e-14 82.8 47 76.6
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 1.0e-14 82.8 47 78.7
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 1.3e-14 82.4 47 80.9
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 1.3e-14 82.4 47 76.6
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.7e-14 82.0 47 76.6
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 1.7e-14 82.0 47 78.7
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 1.7e-14 82.0 47 78.7
Gohir.1Z049729 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.3e-14 81.6 47 74.5
Gohir.D04G000040 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.3e-14 81.6 47 74.5
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 2.3e-14 81.6 47 74.5
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 3.0e-14 81.3 47 78.7
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 3.0e-14 81.3 47 78.7
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 3.0e-14 81.3 47 74.5
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 6.6e-14 80.1 47 76.6
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 6.6e-14 80.1 47 76.6
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 8.6e-14 79.7 47 76.6
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 8.6e-14 79.7 47 76.6
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 8.6e-14 79.7 47 76.6
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 1.1e-13 79.3 47 74.5
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 3.3e-13 77.8 47 74.5
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 3.3e-13 77.8 47 74.5
Gohir.D11G176500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.3e-13 77.8 45 75.6
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 3.3e-13 77.8 47 74.5
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 3.3e-13 77.8 47 70.2
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 3.3e-13 77.8 47 70.2
Zm00001eb266720 Zea mays HOM05D003709 ORTHO05D004364 3.3e-13 77.8 47 70.2
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 4.3e-13 77.4 47 72.3
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 4.3e-13 77.4 47 72.3
ClCG10G018670 Citrullus lanatus HOM05D003709 ORTHO05D004364 4.3e-13 77.4 47 74.5
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 5.6e-13 77.0 47 72.3
ATR0315G087 Amborella trichopoda HOM05D003709 ORTHO05D004364 7.3e-13 76.6 47 68.1
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 7.3e-13 76.6 47 70.2
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 7.3e-13 76.6 47 70.2
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 9.5e-13 76.3 47 72.3
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.5e-13 76.3 53 67.9
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 9.5e-13 76.3 47 72.3
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.2e-12 75.9 47 72.3
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.2e-12 75.9 47 70.2
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 1.2e-12 75.9 47 76.6
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 2.8e-12 74.7 41 80.5
arahy.Tifrunner.gnm1.ann1.K65CIQ Arachis hypogaea HOM05D003709 ORTHO05D004364 3.6e-12 74.3 47 70.2
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 3.6e-12 74.3 47 68.1
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 4.7e-12 73.9 47 74.5
arahy.Tifrunner.gnm1.ann1.VRIY4R Arachis hypogaea HOM05D003709 ORTHO05D004364 6.2e-12 73.6 47 70.2
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 1.8e-11 72.0 47 66.0
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 1.8e-11 72.0 44 68.2
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 2.3e-11 71.6 47 70.2
unitig_744.g24704 Utricularia gibba HOM05D003709 ORTHO05D004364 2.3e-11 71.6 47 66.0
Gohir.D01G158750 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.1e-11 71.2 44 68.2
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 4.0e-11 70.9 47 68.1
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 4.0e-11 70.9 47 66.0
RcHm_v2.0_Chr2g0174001 Rosa chinensis HOM05D003709 ORTHO05D004364 4.0e-11 70.9 48 68.8
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 6.8e-11 70.1 40 80.0
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 6.8e-11 70.1 47 66.0
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 6.8e-11 70.1 47 63.8
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 8.9e-11 69.7 47 66.0
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 8.9e-11 69.7 47 66.0
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.2e-10 69.3 46 65.2
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 1.2e-10 69.3 47 61.7
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 1.5e-10 68.9 47 61.7
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.6e-10 68.2 36 77.8
MD07G1268900 Malus domestica HOM05D003709 ORTHO05D004364 2.6e-10 68.2 47 70.2
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 2.6e-10 68.2 47 66.0
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 3.4e-10 67.8 47 59.6
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.4e-10 67.4 40 75.0
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 4.4e-10 67.4 47 59.6
Os05g0112750 Oryza sativa ssp. japonica HOM05D003709 ORTHO05D004364 5.8e-10 67.0 47 61.7
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 7.5e-10 66.6 47 61.7
MD13G1200900 Malus domestica HOM05D003709 ORTHO05D004364 2.9e-09 64.7 47 66.0
Gohir.D12G071401 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.6e-07 57.4 29 82.8
AagrBONN_evm.TU.Sc2ySwM_228.2513 Anthoceros agrestis HOM05D003709 ORTHO05D004364 7.8e-07 56.6 46 56.5
Gorai.008G079100 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.7e-06 55.5 29 79.3
CBR_g45657 Chara braunii HOM05D003709 ORTHO05D004364 8.6e-06 53.1 49 55.1


User provided reference genes

Program Settings