Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G6070 Aethionema arabicum HOM05D007683 ORTHO05D009703 5.7e-74 280.8 140 100.0
CARHR208020 Cardamine hirsuta HOM05D007683 ORTHO05D009703 6.9e-43 177.6 138 68.8
Sp6g37610 Schrenkiella parvula HOM05D007683 ORTHO05D009703 3.8e-41 171.8 131 71.8
Thhalv10014989m.g Eutrema salsugineum HOM05D007683 ORTHO05D009703 4.9e-41 171.4 140 69.3
AL6G15060 Arabidopsis lyrata HOM05D007683 ORTHO05D009703 1.6e-39 166.4 138 65.9
AT5G05220 Arabidopsis thaliana HOM05D007683 ORTHO05D009703 1.7e-38 162.9 138 63.0
BcaB05g21726 Brassica carinata HOM05D007683 ORTHO05D009703 7.3e-37 157.5 140 62.9
Carub.0006s0415 Capsella rubella HOM05D007683 ORTHO05D009703 1.6e-36 156.4 141 66.7
A10p30970 Brassica napus HOM05D007683 ORTHO05D009703 2.1e-36 156.0 142 66.2
BraA10t45142Z Brassica rapa HOM05D007683 ORTHO05D009703 2.1e-36 156.0 142 66.2
C09p71480 Brassica napus HOM05D007683 ORTHO05D009703 1.2e-34 150.2 138 65.2
BolC9t59911H Brassica oleracea HOM05D007683 ORTHO05D009703 1.3e-33 146.7 141 63.1
BcaC06g32231 Brassica carinata HOM05D007683 ORTHO05D009703 7.1e-24 114.4 141 54.6
THA.LOC104823170 Tarenaya hassleriana HOM05D007683 ORTHO05D009703 4.3e-21 105.1 147 46.9
PGR044G1007 Punica granatum HOM05D007683 ORTHO05D009703 1.0e-17 94.0 132 41.7
Ciclev10033031m.g Citrus clementina HOM05D007683 ORTHO05D009703 1.1e-16 90.5 144 41.7
Duzib106G0215 Durio zibethinus HOM05D007683 ORTHO05D009703 3.2e-16 89.0 117 47.0
COL.COLO4_19470 Corchorus olitorius HOM05D007683 ORTHO05D009703 5.5e-16 88.2 97 50.5
Cpa.g.sc19.42 Carica papaya HOM05D007683 ORTHO05D009703 1.2e-15 87.0 73 56.2
BcaC03g13152 Brassica carinata HOM05D007683 ORTHO05D009703 2.7e-15 85.9 108 45.4
CANSAT56G2075 Cannabis sativa HOM05D007683 ORTHO05D009703 6.0e-15 84.7 75 57.3
MD01G1169200 Malus domestica HOM05D007683 ORTHO05D009703 7.9e-15 84.3 97 50.5
Nitab4.5_0006356g0030 Nicotiana tabacum HOM05D007683 ORTHO05D009703 1.8e-14 83.2 65 60.0
QL08p065063 Quercus lobata HOM05D007683 ORTHO05D009703 1.8e-14 83.2 71 57.7
Cc02_g05230 Coffea canephora HOM05D007683 ORTHO05D009703 2.3e-14 82.8 84 53.6
Sed0023040 Sechium edule HOM05D007683 ORTHO05D009703 3.0e-14 82.4 114 42.1
Dinv21856 Davidia involucrata HOM05D004933 ORTHO05D005465 5.1e-14 81.6 132 40.2
TAR633G1265 Trochodendron aralioides HOM05D007683 ORTHO05D009703 5.1e-14 81.6 110 42.7
CsaV3_5G011110 Cucumis sativus L. HOM05D007683 ORTHO05D009703 6.7e-14 81.3 137 38.7
Thecc.10G184800 Theobroma cacao HOM05D007683 ORTHO05D009703 6.7e-14 81.3 157 37.6
MSTRG.8877 Avicennia marina HOM05D007683 ORTHO05D009703 1.1e-13 80.5 91 51.6
Prupe.2G265400 Prunus persica HOM05D007683 ORTHO05D009703 1.1e-13 80.5 94 50.0
SGA_v2.0_scaffold60G20879 Striga asiatica HOM05D007683 ORTHO05D009703 1.1e-13 80.5 117 42.7
Cfa001197 Carpinus fangiana HOM05D007683 ORTHO05D009703 1.5e-13 80.1 72 55.6
ClCG07G005260 Citrullus lanatus HOM05D007683 ORTHO05D009703 1.9e-13 79.7 129 38.8
Manes.10G003157 Manihot esculenta HOM05D007683 ORTHO05D009703 1.9e-13 79.7 66 60.6
Nitab4.5_0000171g0240 Nicotiana tabacum HOM05D007683 ORTHO05D009703 1.9e-13 79.7 72 54.2
Sed0015955 Sechium edule HOM05D007683 ORTHO05D009703 1.9e-13 79.7 114 44.7
Haze_17368 Corylus avellana HOM05D007683 ORTHO05D009703 3.3e-13 79.0 107 43.0
Glyma.14G186400 Glycine max HOM05D007683 ORTHO05D009703 5.7e-13 78.2 133 39.8
MD07G1235100 Malus domestica HOM05D007683 ORTHO05D009703 7.4e-13 77.8 125 40.0
Medtr5g067740 Medicago truncatula HOM05D007683 ORTHO05D009703 7.4e-13 77.8 55 63.6
MELO3C020169.2 Cucumis melo HOM05D007683 ORTHO05D009703 9.6e-13 77.4 136 41.2
Eucgr.J00104 Eucalyptus grandis HOM05D007683 ORTHO05D009703 9.6e-13 77.4 114 41.2
FAN03G1207 Fragaria x ananassa HOM05D007683 ORTHO05D009703 9.6e-13 77.4 87 50.6
Gorai.010G219400 Gossypium raimondii HOM05D007683 ORTHO05D009703 1.6e-12 76.6 135 40.7
Oeu008103.1 Olea europaea HOM05D007683 ORTHO05D009703 1.6e-12 76.6 120 40.0
TPR.G7683 Trifolium pratense HOM05D007683 ORTHO05D009703 1.6e-12 76.6 74 54.1
Gohir.D06G187100 Gossypium hirsutum HOM05D007683 ORTHO05D009703 2.8e-12 75.9 135 40.7
C02p02220 Brassica napus HOM05D007683 ORTHO05D009703 3.7e-12 75.5 38 86.8
FAN01G0748 Fragaria x ananassa HOM05D007683 ORTHO05D009703 3.7e-12 75.5 87 49.4
Potri.013G090200 Populus trichocarpa HOM05D007683 ORTHO05D009703 3.7e-12 75.5 146 39.7
Solyc03g095700.1 Solanum lycopersicum HOM05D007683 ORTHO05D009703 4.8e-12 75.1 75 50.7
Glyma.06G141600 Glycine max HOM05D007683 ORTHO05D009703 6.3e-12 74.7 63 54.0
RcHm_v2.0_Chr1g0372481 Rosa chinensis HOM05D007683 ORTHO05D009703 6.3e-12 74.7 87 47.1
Atru.chr12.196 Acer truncatum HOM05D007683 ORTHO05D009703 8.2e-12 74.3 66 59.1
FvH4_7g26070 Fragaria vesca HOM05D007683 ORTHO05D009703 8.2e-12 74.3 68 55.9
Lalb_Chr11g0067711 Lupinus albus HOM05D007683 ORTHO05D009703 8.2e-12 74.3 69 52.2
Peaxi162Scf00073g10232 Petunia axillaris HOM05D007683 ORTHO05D009703 8.2e-12 74.3 69 53.6
Rhsim03G0153400 Rhododendron simsii HOM05D007683 ORTHO05D009703 8.2e-12 74.3 58 62.1
Psat2g062760 Pisum sativum HOM05D007683 ORTHO05D009703 1.1e-11 73.9 55 63.6
DCAR_014661 Daucus carota HOM05D007683 ORTHO05D009703 1.4e-11 73.6 144 34.7
TWI73G0272 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 1.4e-11 73.6 79 48.1
Hma1.2p1_0264F.1_g105970 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 2.4e-11 72.8 91 47.3
Phvul.008G186200 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 2.4e-11 72.8 77 48.1
Hma1.2p1_1805F.1_g303190 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 3.1e-11 72.4 63 55.6
Sopen03g025620 Solanum pennellii HOM05D007683 ORTHO05D009703 3.1e-11 72.4 96 45.8
PGSC0003DMG400020609 Solanum tuberosum HOM05D007683 ORTHO05D009703 3.1e-11 72.4 63 55.6
Glyma.02G219100 Glycine max HOM05D007683 ORTHO05D009703 4.1e-11 72.0 116 38.8
Nn2g10270 Nelumbo nucifera HOM05D007683 ORTHO05D009703 4.1e-11 72.0 51 60.8
Gohir.D10G184400 Gossypium hirsutum HOM05D007683 ORTHO05D009703 5.3e-11 71.6 69 52.2
Gorai.011G206600 Gossypium raimondii HOM05D007683 ORTHO05D009703 5.3e-11 71.6 63 57.1
LjContig00408g0002016 Lotus japonicus HOM05D007683 ORTHO05D009703 5.3e-11 71.6 86 47.7
Sabra13G0070100 Salix brachista HOM05D007683 ORTHO05D009703 5.3e-11 71.6 116 43.1
Ah.12g064430 Amaranthus hybridus HOM05D007683 ORTHO05D009703 6.9e-11 71.2 63 54.0
Gohir.A10G177800 Gossypium hirsutum HOM05D007683 ORTHO05D009703 6.9e-11 71.2 63 57.1
Lj1g0018746 Lotus japonicus HOM05D007683 ORTHO05D009703 6.9e-11 71.2 140 35.7
VMungo1309G1531 Vigna mungo HOM05D007683 ORTHO05D009703 1.2e-10 70.5 68 50.0
Migut.F00568 Erythranthe guttata HOM05D007683 ORTHO05D009703 1.5e-10 70.1 63 57.1
Ah.11g042460 Amaranthus hybridus HOM05D007683 ORTHO05D009703 4.5e-10 68.6 44 68.2
Gohir.A06G180150 Gossypium hirsutum HOM05D007683 ORTHO05D009703 5.9e-10 68.2 57 54.4
VMungo0647G1507 Vigna mungo HOM05D007683 ORTHO05D009703 1.3e-09 67.0 67 50.7
Phvul.009G042800 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 2.2e-09 66.2 79 45.6
Lj6g0012778 Lotus japonicus HOM05D007683 ORTHO05D009703 6.5e-09 64.7 83 45.8
TWI09G1439 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 1.1e-08 63.9 129 37.2
Lsat_1_v5_gn_2_126821 Lactuca sativa HOM05D007683 ORTHO05D009703 2.5e-08 62.8 45 64.4
ECA238G0799 Erigeron canadensis HOM05D007683 ORTHO05D009703 9.3e-08 60.8 46 65.2
ATR1127G105 Amborella trichopoda HOM05D007683 ORTHO05D009703 2.1e-07 59.7 87 41.4
MBI15_g36064_MAGBIO Magnolia biondii HOM05D007683 ORTHO05D009703 2.7e-07 59.3 70 41.4
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 1.0e-06 57.4 44 63.6
HanXRQChr14g0460581 Helianthus annuus HOM05D007683 ORTHO05D009703 1.3e-06 57.0 136 32.4
Zm00001eb015980 Zea mays HOM05D007683 ORTHO05D009703 2.3e-06 56.2 47 55.3


User provided reference genes

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