Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.2e-254 881.3 463 100.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.9e-174 616.3 464 71.3
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.8e-172 609.8 459 71.0
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 6.8e-172 607.8 464 70.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 3.2e-169 599.0 462 70.3
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 7.8e-168 594.3 447 68.5
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.3e-167 592.8 457 69.8
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.8e-163 578.2 455 67.5
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.2e-162 576.2 457 68.3
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 6.0e-160 568.2 457 67.8
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 7.8e-160 567.8 458 68.1
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 8.6e-159 564.3 457 67.6
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 4.3e-158 562.0 457 67.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 6.6e-151 538.1 457 65.0
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 8.6e-151 537.7 464 62.9
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.3e-150 535.8 453 64.2
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.2e-149 533.9 453 64.0
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 8.1e-149 531.2 458 64.0
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 8.4e-146 521.2 457 62.1
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.6e-144 516.9 466 60.9
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 6.0e-144 515.0 457 61.9
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.7e-143 513.5 461 64.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 3.9e-143 512.3 457 61.9
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.3e-142 508.8 464 60.3
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.9e-130 468.8 419 63.2
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 6.2e-125 451.8 453 58.3
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.1e-121 441.0 476 53.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 8.1e-117 424.9 468 53.8
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.6e-115 418.3 478 51.0
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 2.2e-114 416.8 473 53.3
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 8.4e-114 414.8 462 51.7
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 6.0e-112 408.7 475 51.6
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.5e-110 404.1 465 51.2
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.5e-110 403.3 469 50.1
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.3e-110 402.9 479 50.9
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.3e-110 402.5 478 49.0
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.3e-109 401.0 484 50.2
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.3e-109 401.0 474 51.1
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.6e-109 400.6 461 51.0
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.7e-109 399.4 476 51.3
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.8e-108 397.1 472 49.8
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.8e-108 397.1 472 50.2
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.8e-108 397.1 472 50.2
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.8e-108 397.1 481 49.1
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 4.1e-108 396.0 470 50.0
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 5.3e-108 395.6 484 49.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 9.0e-108 394.8 486 49.6
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.5e-107 394.0 460 50.7
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 4.5e-107 392.5 466 50.0
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 5.9e-107 392.1 473 50.7
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.3e-106 391.0 467 50.1
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.3e-106 391.0 468 48.5
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.7e-106 390.6 473 48.8
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.8e-106 389.4 466 50.6
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 3.8e-106 389.4 487 49.5
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.4e-105 387.5 473 48.4
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.5e-105 386.7 474 48.5
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 3.2e-105 386.3 466 48.9
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 5.5e-105 385.6 337 63.8
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.2e-104 384.4 465 48.6
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.6e-104 384.0 464 47.4
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.6e-104 382.9 466 48.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.0e-103 381.3 464 47.2
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.0e-103 379.8 471 48.6
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.5e-102 377.5 469 47.3
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.5e-102 376.7 463 46.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 3.3e-102 376.3 477 48.6
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 3.3e-102 376.3 469 48.2
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 7.4e-102 375.2 484 46.9
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.3e-101 374.4 468 48.5
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 8.2e-101 371.7 475 47.2
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.1e-100 371.3 462 48.5
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.1e-100 371.3 465 48.0
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.0e-99 367.1 469 47.5
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.0e-99 367.1 476 47.7
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.9e-99 365.5 471 46.1
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.3e-98 364.4 465 48.0
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.7e-98 364.0 469 47.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.7e-98 364.0 474 47.5
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.9e-97 360.5 484 46.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.5e-97 359.0 469 47.5
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 7.2e-97 358.6 474 45.8
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.6e-96 357.5 459 46.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.7e-96 356.7 478 46.4
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.0e-95 354.8 530 43.2
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.8e-95 354.0 483 45.3
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.1e-94 351.3 468 45.3
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.5e-94 350.9 478 46.2
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-94 350.9 467 47.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.5e-94 350.9 438 48.6
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.0e-94 350.5 475 44.6
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.3e-93 347.8 606 40.3
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.7e-93 347.4 470 44.7
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.8e-93 346.7 498 44.8
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.1e-92 344.7 468 44.7
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.1e-92 344.7 467 45.0
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.4e-92 344.4 481 45.5
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 3.1e-92 343.2 478 42.9
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 9.1e-92 341.7 500 44.4
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.9e-91 339.0 467 44.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 7.7e-91 338.6 467 45.4
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.7e-90 337.4 465 47.3
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.2e-88 331.3 463 44.5
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.6e-88 330.9 471 43.7
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.1e-88 330.5 479 43.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 3.6e-88 329.7 467 45.4
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.4e-87 327.8 477 43.6
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 3.9e-87 326.2 372 48.7
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 4.4e-86 322.8 495 41.8
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 3.7e-85 319.7 475 44.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.4e-84 317.8 316 52.2
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.4e-84 317.0 485 41.9
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 3.1e-84 316.6 482 43.2
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 7.0e-84 315.5 465 43.4
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.0e-83 313.9 457 43.3
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.3e-82 311.2 468 43.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 6.5e-82 308.9 279 58.1
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 3.2e-81 306.6 465 41.7
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.7e-80 303.5 302 54.3
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.7e-80 303.5 471 41.6
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.8e-79 300.8 462 42.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.8e-79 300.8 478 41.4
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-78 297.7 471 41.8
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.6e-78 297.0 531 39.0
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.0e-74 282.7 406 41.1
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.0e-71 275.0 378 46.8
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 2.3e-71 273.9 444 38.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.0e-71 273.1 483 37.9
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.7e-70 269.2 440 41.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.8e-68 264.2 368 40.8
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.2e-67 261.5 453 41.5
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.2e-67 261.5 483 36.9
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.5e-66 255.4 302 48.7
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.1e-65 255.0 367 42.2
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 4.2e-65 253.1 437 38.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-61 241.5 253 52.6
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.8e-61 240.4 375 40.5
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.2e-59 235.0 386 40.7
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.6e-59 234.6 354 40.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.0e-59 234.2 207 59.9
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.0e-59 234.2 363 39.1
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.7e-59 233.8 384 42.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.0e-58 231.9 380 40.8
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.8e-55 221.1 351 40.7
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.2e-55 219.5 312 38.8
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 8.9e-55 218.8 312 38.8
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.6e-54 217.2 277 49.1
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 3.7e-53 213.4 384 39.1
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.9e-51 206.1 317 37.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-49 201.1 293 38.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.3e-49 199.9 307 38.4
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.8e-47 194.5 326 38.3
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 7.5e-46 189.1 379 37.2
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 4.9e-45 186.4 141 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 1.4e-44 184.9 337 38.0
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.4e-44 184.1 223 47.1
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.1e-44 183.3 464 31.9
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 7.0e-44 182.6 258 43.4
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 7.0e-44 182.6 474 31.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 9.2e-44 182.2 195 50.3
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.6e-42 176.0 225 41.8
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.5e-38 164.9 372 34.9
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.4e-38 163.7 408 30.9
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-32 144.4 137 53.3
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.8e-32 144.1 206 41.7
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.2e-32 142.9 99 73.7
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.5e-30 138.3 168 48.2
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.3e-26 125.2 95 64.2
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.4e-23 114.4 253 35.2
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.4e-20 104.4 212 34.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.4e-20 103.2 187 38.0
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.2e-19 102.1 81 64.2
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.5e-19 100.5 82 62.2
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 6.0e-19 99.8 192 35.4
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.0e-18 99.0 64 75.0
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 4.6e-11 73.6 63 61.9
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 6.7e-10 69.7 215 29.3
Sp7g10590 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.6e-09 66.6 82 52.4
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.6e-08 65.1 69 50.7
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 4.0e-07 60.5 53 64.2
BcaB01g00036 Brassica carinata HOM05D003737 ORTHO05D095156 2.0e-06 58.2 78 47.4


User provided reference genes

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