Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G5030 Aethionema arabicum HOM05D008373 ORTHO05D015254 5.1e-95 350.9 159 100.0
Thhalv10005065m.g Eutrema salsugineum HOM05D008373 ORTHO05D015254 2.7e-72 275.4 156 77.6
BcaNung03983 Brassica carinata HOM05D008373 ORTHO05D015254 2.3e-71 272.3 155 76.8
A06p36560 Brassica napus HOM05D008373 ORTHO05D015254 4.8e-69 264.6 155 73.5
BraA06t26582Z Brassica rapa HOM05D008373 ORTHO05D015254 4.8e-69 264.6 155 73.5
CARHR187340 Cardamine hirsuta HOM05D008373 ORTHO05D015254 4.8e-69 264.6 155 74.2
AL6G38050 Arabidopsis lyrata HOM05D008373 ORTHO05D015254 6.3e-69 264.2 155 73.5
BolC7t44722H Brassica oleracea HOM05D008373 ORTHO05D015254 3.1e-68 261.9 155 72.9
C07p41920 Brassica napus HOM05D008373 ORTHO05D015254 4.1e-68 261.5 155 72.9
AT5G26060 Arabidopsis thaliana HOM05D008373 ORTHO05D015254 3.5e-67 258.5 155 72.9
Sp2g21670 Schrenkiella parvula HOM05D008373 ORTHO05D010873 8.8e-63 243.8 146 72.6
Carub.0006s2382 Capsella rubella HOM05D008373 ORTHO05D015254 2.0e-62 242.7 155 67.1
THA.LOC104799169 Tarenaya hassleriana HOM05D008373 ORTHO05D015254 2.4e-60 235.7 156 63.5
AT5G26050 Arabidopsis thaliana HOM05D008373 ORTHO05D010873 2.8e-16 89.4 126 38.1
AL6G38040 Arabidopsis lyrata HOM05D008373 ORTHO05D010873 6.2e-16 88.2 126 38.9
Carub.0006s2381 Capsella rubella HOM05D008373 ORTHO05D010873 1.2e-14 84.0 121 36.4
Thhalv10005364m.g Eutrema salsugineum HOM05D008373 ORTHO05D010873 1.5e-14 83.6 126 37.3
A06p36550 Brassica napus HOM05D008373 ORTHO05D010873 9.9e-14 80.9 126 36.5
C07p41930 Brassica napus HOM05D008373 ORTHO05D010873 9.9e-14 80.9 126 36.5
BolC7t44724H Brassica oleracea HOM05D008373 ORTHO05D010873 9.9e-14 80.9 126 36.5
BraA02t08883Z Brassica rapa HOM05D008373 ORTHO05D010873 9.9e-14 80.9 126 35.7
BraA06t26581Z Brassica rapa HOM05D008373 ORTHO05D010873 9.9e-14 80.9 126 36.5
A02p39180 Brassica napus HOM05D008373 ORTHO05D010873 1.3e-13 80.5 107 39.3
BcaNung03984 Brassica carinata HOM05D008373 ORTHO05D010873 1.7e-13 80.1 126 35.7
A09p06020 Brassica napus HOM05D008373 ORTHO05D010873 4.9e-13 78.6 125 34.4
BraA09t36244Z Brassica rapa HOM05D008373 ORTHO05D010873 4.9e-13 78.6 125 34.4
BcaC04g23598 Brassica carinata HOM05D008373 ORTHO05D010873 8.4e-13 77.8 125 35.2
C09p06580 Brassica napus HOM05D008373 ORTHO05D010873 8.4e-13 77.8 125 35.2
BolC9t53584H Brassica oleracea HOM05D008373 ORTHO05D010873 8.4e-13 77.8 125 35.2
THA.LOC104811242 Tarenaya hassleriana HOM05D008373 ORTHO05D010873 1.9e-12 76.6 157 33.8
BcaB04g19754 Brassica carinata HOM05D008373 ORTHO05D010873 2.4e-12 76.3 125 32.8
CARHR187330 Cardamine hirsuta HOM05D008373 ORTHO05D010873 2.4e-12 76.3 107 37.4
Thhalv10015698m.g Eutrema salsugineum HOM05D008373 ORTHO05D010873 9.3e-12 74.3 155 29.7
AL6G22570 Arabidopsis lyrata HOM05D008373 ORTHO05D010873 1.6e-11 73.6 110 40.9
C02p05400 Brassica napus HOM05D008373 ORTHO05D010873 3.5e-11 72.4 126 32.5
Aa31LG3G15380 Aethionema arabicum HOM05D008373 ORTHO05D010873 6.0e-11 71.6 133 33.8
THA.LOC104811315 Tarenaya hassleriana HOM05D008373 ORTHO05D010873 6.0e-11 71.6 158 33.5
AT5G11820 Arabidopsis thaliana HOM05D008373 ORTHO05D010873 1.7e-10 70.1 110 38.2
Thhalv10015656m.g Eutrema salsugineum HOM05D008373 ORTHO05D010873 1.7e-10 70.1 132 30.3
THA.LOC104811243 Tarenaya hassleriana HOM05D008373 ORTHO05D010873 3.9e-10 68.9 122 32.0
Peaxi162Scf00047g01539 Petunia axillaris HOM05D000256 ORTHO05D000119 5.1e-10 68.6 136 31.6
Carub.0006s1035 Capsella rubella HOM05D008373 ORTHO05D010873 6.6e-10 68.2 108 37.0
BraA10t44655Z Brassica rapa HOM05D008373 ORTHO05D010873 8.7e-10 67.8 123 31.7
TWI14G0081 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 5.6e-09 65.1 78 42.3
unitig_899.g15051 Utricularia gibba HOM05D000256 ORTHO05D000119 9.6e-09 64.3 115 28.7
Lalb_Chr07g0181531 Lupinus albus HOM05D000256 ORTHO05D000119 2.1e-08 63.2 105 36.2
Lj2g0009295 Lotus japonicus HOM05D000256 ORTHO05D000119 2.8e-08 62.8 142 31.7
RcHm_v2.0_Chr3g0448331 Rosa chinensis HOM05D000256 ORTHO05D000119 2.8e-08 62.8 103 35.0
C02p58780 Brassica napus HOM05D008373 ORTHO05D010873 8.1e-08 61.2 110 32.7
unitig_899.g15047 Utricularia gibba HOM05D000256 ORTHO05D000119 8.1e-08 61.2 134 29.9
THA.LOC104820113 Tarenaya hassleriana HOM05D000256 ORTHO05D000119 1.1e-07 60.8 135 30.4
Prupe.1G043900 Prunus persica HOM05D000256 ORTHO05D000119 1.4e-07 60.5 99 34.3
Hma1.2p1_0785F.1_g217560 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.4e-07 59.7 100 34.0
CAN.G229.22 Capsicum annuum HOM05D000256 ORTHO05D000119 4.0e-07 58.9 124 33.9
FAN15G1242 Fragaria x ananassa HOM05D000070 ORTHO05D003190 4.0e-07 58.9 110 33.6
PGR083G1396 Punica granatum HOM05D000256 ORTHO05D000119 5.3e-07 58.5 92 35.9
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 5.3e-07 58.5 120 29.2
Migut.F01732 Erythranthe guttata HOM05D000256 ORTHO05D000119 6.9e-07 58.2 92 34.8
Thhalv10015914m.g Eutrema salsugineum HOM05D003012 ORTHO05D000119 6.9e-07 58.2 136 29.4
Sed0027656 Sechium edule HOM05D000256 ORTHO05D000119 6.9e-07 58.2 98 34.7
Migut.F01745 Erythranthe guttata HOM05D000256 ORTHO05D000119 9.0e-07 57.8 90 34.4
CsaV3_5G014260 Cucumis sativus L. HOM05D012637 ORTHO05D015615 1.2e-06 57.4 96 35.4
CsaV3_5G014270 Cucumis sativus L. HOM05D000256 ORTHO05D015615 1.2e-06 57.4 101 32.7
Gohir.A11G198542 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.2e-06 57.4 110 31.8
Lj5g0020940 Lotus japonicus HOM05D000256 ORTHO05D000119 1.2e-06 57.4 117 36.8
TWI14G1030 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 1.2e-06 57.4 95 36.8
Lsat_1_v5_gn_8_12180 Lactuca sativa HOM05D000256 ORTHO05D000119 1.5e-06 57.0 86 34.9
Migut.F01744 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.0e-06 56.6 90 33.3
SalBow7G2914 Salvia bowleyana HOM05D000256 ORTHO05D000119 2.0e-06 56.6 113 31.0
ClCG08G002620 Citrullus lanatus HOM05D012637 ORTHO05D015615 2.6e-06 56.2 96 34.4
Migut.I00440 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.6e-06 56.2 95 29.5
Sed0005100 Sechium edule HOM05D012637 ORTHO05D000119 2.6e-06 56.2 96 36.5
Prupe.8G208400 Prunus persica HOM05D000256 ORTHO05D000119 3.4e-06 55.8 143 27.3
MSTRG.12394 Avicennia marina HOM05D000256 ORTHO05D000119 4.5e-06 55.5 110 33.6
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 4.5e-06 55.5 98 31.6
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 4.5e-06 55.5 91 34.1
FvH4_2g19690 Fragaria vesca HOM05D000256 ORTHO05D000119 4.5e-06 55.5 100 34.0
Gorai.007G244400 Gossypium raimondii HOM05D000256 ORTHO05D000119 4.5e-06 55.5 110 30.9
SGA_v2.0_scaffold13G06528 Striga asiatica HOM05D000256 ORTHO05D000119 4.5e-06 55.5 94 30.9
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 4.5e-06 55.5 94 29.8
unitig_899.g15048 Utricularia gibba HOM05D000256 ORTHO05D000119 4.5e-06 55.5 111 34.2
CAN.G194.31 Capsicum annuum HOM05D000256 ORTHO05D000119 5.8e-06 55.1 137 29.2
CAN.G2051.1 Capsicum annuum HOM05D000256 ORTHO05D000119 5.8e-06 55.1 137 29.2
CAN.G394.111 Capsicum annuum HOM05D000256 ORTHO05D000119 5.8e-06 55.1 124 29.8
Cpa.g.sc169.24 Carica papaya HOM05D000256 ORTHO05D000119 5.8e-06 55.1 129 29.5
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 5.8e-06 55.1 118 25.4
FvH4_2g19740 Fragaria vesca HOM05D000256 ORTHO05D000119 5.8e-06 55.1 127 30.7
SGA_v2.0_scaffold1G00733 Striga asiatica HOM05D000256 ORTHO05D000119 5.8e-06 55.1 100 32.0
unitig_899.g15044 Utricularia gibba HOM05D000256 ORTHO05D000119 5.8e-06 55.1 94 34.0
MELO3C032449.2 Cucumis melo HOM05D012637 ORTHO05D000119 7.6e-06 54.7 99 33.3
Oeu022154.1 Olea europaea HOM05D000256 ORTHO05D000119 7.6e-06 54.7 96 32.3
QL02p097446 Quercus lobata HOM05D013890 ORTHO05D016266 7.6e-06 54.7 130 31.5
SGA_v2.0_scaffold329G48834 Striga asiatica HOM05D000256 ORTHO05D000119 7.6e-06 54.7 94 34.0
SGA_v2.0_scaffold625G53240 Striga asiatica HOM05D000256 ORTHO05D000119 7.6e-06 54.7 93 33.3
MELO3C021041.2 Cucumis melo HOM05D000256 ORTHO05D000119 9.9e-06 54.3 106 34.0
FAN24G1258 Fragaria x ananassa HOM05D009280 ORTHO05D012103 9.9e-06 54.3 125 29.6
Oeu008822.1 Olea europaea HOM05D000256 ORTHO05D000119 9.9e-06 54.3 125 33.6
SalBow4G2587 Salvia bowleyana HOM05D000256 ORTHO05D000119 9.9e-06 54.3 104 31.7


User provided reference genes

Program Settings