Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.7e-216 755.0 363 100.0
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.1e-188 661.4 363 89.5
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 4.4e-158 561.6 355 78.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 8.2e-157 557.4 366 75.7
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-156 557.0 357 77.0
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.8e-156 556.2 367 76.3
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.6e-155 553.1 359 76.3
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.0e-155 552.7 365 74.8
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 3.5e-155 552.0 366 75.4
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 5.9e-155 551.2 355 77.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 3.8e-154 548.5 361 75.3
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 8.0e-152 540.8 357 74.2
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.8e-151 539.7 364 73.6
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 6.8e-151 537.7 364 73.4
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 5.0e-146 521.5 363 71.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 3.7e-141 505.4 357 68.9
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.4e-140 502.7 358 68.2
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 4.3e-137 491.9 359 67.4
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 7.3e-137 491.1 361 66.8
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.6e-136 488.8 358 66.2
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.6e-136 488.8 357 66.7
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.4e-135 486.9 362 65.5
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.4e-135 486.9 360 67.8
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 2.3e-135 486.1 357 65.8
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.3e-135 486.1 357 67.2
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 3.0e-135 485.7 340 69.7
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 3.0e-135 485.7 358 67.3
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 8.9e-135 484.2 363 66.4
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.2e-134 483.8 358 65.6
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.5e-134 483.4 358 65.9
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.5e-134 483.4 358 65.9
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.5e-134 483.4 357 66.9
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 4.4e-134 481.9 363 66.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 9.8e-134 480.7 357 65.3
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.7e-133 479.9 360 66.4
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.2e-133 479.6 359 66.6
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.7e-133 478.8 358 65.6
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 6.4e-133 478.0 357 66.9
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.1e-132 477.2 359 65.2
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.1e-132 477.2 356 68.8
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.4e-132 476.9 361 66.5
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.4e-132 476.9 358 65.1
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 3.2e-132 475.7 360 65.0
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.1e-132 475.3 358 69.3
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.1e-132 475.3 365 63.6
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.1e-132 475.3 361 63.4
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.1e-132 475.3 356 64.9
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 7.0e-132 474.6 356 66.0
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.6e-131 473.4 359 65.5
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.6e-131 473.4 366 65.3
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.7e-131 472.6 360 65.8
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.5e-131 472.2 355 63.4
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.6e-131 471.9 357 65.0
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 6.0e-131 471.5 357 64.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.0e-131 471.5 360 64.4
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 6.0e-131 471.5 360 64.4
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 6.0e-131 471.5 357 63.3
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.7e-130 469.9 357 64.4
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.3e-130 469.5 357 63.3
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 2.3e-130 469.5 361 63.2
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 3.0e-130 469.2 356 63.5
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 3.9e-130 468.8 363 65.6
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 3.9e-130 468.8 356 66.6
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 8.6e-130 467.6 362 65.2
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 8.6e-130 467.6 358 62.8
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.9e-129 466.5 361 62.9
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 2.5e-129 466.1 357 63.3
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 5.6e-129 464.9 363 64.2
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 5.6e-129 464.9 358 62.6
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.2e-128 463.8 363 62.5
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.2e-128 463.8 362 64.4
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.6e-128 463.4 362 63.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.8e-128 462.6 385 60.5
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 3.6e-128 462.2 364 62.4
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 8.0e-128 461.1 361 64.8
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 8.0e-128 461.1 382 60.5
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.1e-127 460.7 360 64.4
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.8e-127 459.9 362 63.8
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 2.3e-127 459.5 362 64.4
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 5.2e-127 458.4 361 64.0
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 5.2e-127 458.4 342 65.5
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 8.9e-127 457.6 358 65.4
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.2e-126 457.2 354 62.4
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.5e-126 456.8 357 64.1
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.6e-126 456.1 365 62.2
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 4.4e-126 455.3 358 64.0
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 4.4e-126 455.3 357 63.3
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.8e-126 454.9 362 62.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 7.5e-126 454.5 366 61.5
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.3e-125 453.8 382 59.9
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.7e-125 453.4 379 59.9
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.9e-125 452.6 362 61.9
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.1e-124 450.7 357 63.0
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.9e-124 449.9 411 56.0
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 7.0e-124 448.0 359 61.0
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.6e-123 446.8 356 62.4
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.6e-120 436.8 343 62.1
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.7e-120 435.3 316 67.4
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.8e-119 433.3 360 61.4
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 2.3e-119 433.0 258 79.1
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.0e-119 432.2 311 66.9
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 4.0e-119 432.2 363 60.6
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 8.9e-119 431.0 333 64.0
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 8.9e-119 431.0 310 67.1
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.5e-118 430.3 321 65.4
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 7.5e-118 427.9 312 65.1
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.3e-117 427.2 328 66.2
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 1.7e-117 426.8 333 63.7
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 4.9e-117 425.2 487 48.7
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 4.9e-117 425.2 310 66.8
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 4.9e-117 425.2 288 70.8
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-111 407.1 310 63.5
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.2e-109 399.8 268 70.5
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 3.9e-106 389.0 326 60.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.6e-104 382.5 300 65.7
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.8e-103 380.2 334 57.2
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.4e-103 379.8 370 55.1
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 2.9e-101 372.9 341 56.6
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.3e-96 357.5 393 49.4
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 3.6e-96 355.9 254 66.9
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 7.6e-94 348.2 252 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 3.2e-92 342.8 362 50.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.2e-91 340.9 392 50.3
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 6.0e-91 338.6 241 67.6
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 6.7e-90 335.1 240 67.9
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 6.7e-90 335.1 388 48.2
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.1e-89 334.3 221 71.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.3e-89 332.8 385 47.3
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 8.1e-88 328.2 325 52.3
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.1e-87 327.8 248 66.1
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 3.1e-87 326.2 292 57.9
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.3e-85 320.9 412 45.1
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 6.4e-85 318.5 206 71.4
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 8.4e-85 318.2 306 50.3
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 5.1e-82 308.9 242 62.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.9e-81 307.0 250 61.6
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 6.9e-79 298.5 216 68.5
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.0e-74 284.6 199 66.8
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.3e-74 284.3 201 75.6
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 3.3e-73 279.6 277 52.7
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.8e-71 273.9 287 47.4
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.0e-70 270.4 197 68.5
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.9e-70 268.9 231 60.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 6.5e-69 265.4 297 49.2
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 8.8e-66 255.0 195 65.1
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-63 248.1 197 63.5
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.2e-62 244.6 344 45.1
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 5.0e-61 239.2 133 82.0
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 5.0e-45 186.0 332 32.5
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.6e-43 181.0 163 57.7
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 2.6e-41 173.7 163 56.4
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 7.5e-41 172.2 201 48.8
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.7e-40 171.0 134 60.4
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.0e-38 164.1 216 38.4
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 7.7e-38 162.2 323 36.5
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-37 161.8 90 82.2
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.2e-34 149.4 304 28.9
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.0e-33 147.5 118 62.7
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.5e-28 130.6 344 31.1
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.4e-25 120.2 214 33.6
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.9e-13 80.1 77 48.1
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 9.5e-12 75.5 73 50.7
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 2.1e-11 74.3 49 67.3
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.2e-10 69.7 67 49.3
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.2e-09 68.6 71 50.7
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 5.8e-09 66.2 77 44.2
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.3e-08 65.1 77 44.2
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 4.6e-06 56.6 54 53.7


User provided reference genes

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