Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 3.3e-95 351.7 175 100.0
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 6.3e-46 188.0 186 61.8
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 4.0e-40 168.7 171 59.6
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 8.9e-40 167.5 156 62.2
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.7e-36 156.0 171 56.1
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.5e-36 155.6 170 55.3
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.5e-34 150.2 182 53.8
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 5.6e-34 148.3 175 51.4
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 6.2e-33 144.8 175 50.9
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 6.2e-33 144.8 175 50.9
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 6.2e-33 144.8 175 50.9
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 6.8e-32 141.4 170 54.7
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.9e-30 136.0 173 51.4
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 6.4e-30 134.8 174 47.1
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-29 133.7 173 50.9
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.4e-29 133.7 173 50.9
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.9e-29 133.3 182 51.6
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.2e-29 132.5 167 51.5
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 3.2e-29 132.5 167 50.3
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.2e-29 131.0 174 48.9
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-28 130.2 181 47.0
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-28 129.4 181 47.5
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 2.7e-28 129.4 181 47.5
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 7.8e-28 127.9 188 50.5
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.0e-27 125.9 180 50.6
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.9e-27 125.6 176 50.0
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 5.0e-27 125.2 167 49.7
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.5e-26 123.6 166 48.2
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.5e-26 122.9 172 43.0
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.3e-26 122.1 179 46.9
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 4.3e-26 122.1 167 44.9
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 5.6e-26 121.7 180 47.8
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 9.5e-26 120.9 171 44.4
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.1e-25 119.8 182 46.2
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 4.7e-25 118.6 184 47.8
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 4.7e-25 118.6 196 39.8
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 8.1e-25 117.9 182 46.2
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 5.2e-24 115.2 196 41.8
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 6.8e-24 114.8 181 47.5
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 6.8e-24 114.8 181 47.5
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 8.9e-24 114.4 181 47.5
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 2.0e-23 113.2 175 45.7
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 2.0e-23 113.2 192 39.1
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.6e-23 112.8 187 38.5
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 3.4e-23 112.5 180 45.0
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 3.4e-23 112.5 170 47.1
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 3.4e-23 112.5 170 47.1
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 3.4e-23 112.5 166 40.4
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 7.5e-23 111.3 159 49.1
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 2.9e-22 109.4 167 41.9
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.7e-22 109.0 166 39.2
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 4.9e-22 108.6 191 46.6
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 6.4e-22 108.2 180 41.1
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 6.4e-22 108.2 168 39.9
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 8.3e-22 107.8 170 45.9
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 8.3e-22 107.8 167 43.1
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.1e-21 107.5 180 41.1
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.9e-21 106.7 166 39.2
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.9e-21 106.7 166 39.2
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.9e-21 106.7 199 39.2
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-21 106.3 187 38.0
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.2e-21 105.9 166 39.2
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.2e-21 105.9 177 40.7
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.1e-21 105.5 187 36.4
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 5.4e-21 105.1 168 47.0
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 5.4e-21 105.1 168 47.0
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.4e-21 105.1 163 41.7
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 7.1e-21 104.8 195 39.0
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 9.2e-21 104.4 184 38.0
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.2e-20 104.0 186 35.5
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.6e-20 103.6 202 38.6
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.1e-20 103.2 192 40.1
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.7e-20 102.8 184 41.3
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.5e-20 102.4 182 40.7
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 4.6e-20 102.1 172 39.5
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.8e-20 101.3 174 39.1
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-19 100.9 166 38.6
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.3e-19 100.5 182 39.0
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.7e-19 100.1 171 40.4
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-19 100.1 182 40.1
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-19 100.1 180 39.4
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.7e-19 100.1 194 37.1
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.3e-19 99.8 171 38.6
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-19 99.8 182 40.1
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.0e-19 99.4 164 39.0
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 3.0e-19 99.4 183 37.2
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 3.9e-19 99.0 199 37.7
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-19 98.6 182 39.6
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-19 98.6 182 40.1
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 6.6e-19 98.2 163 39.9
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 8.6e-19 97.8 195 36.9
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.1e-18 97.4 191 36.6
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.1e-18 97.4 191 36.6
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.5e-18 97.1 200 37.5
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.5e-18 96.3 184 35.9
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-18 95.9 180 38.3
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 4.3e-18 95.5 165 38.2
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 5.6e-18 95.1 161 41.0
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 5.6e-18 95.1 173 39.9
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.2e-17 94.0 192 36.5
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.2e-17 94.0 200 37.0
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 1.6e-17 93.6 184 35.9
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.6e-17 93.6 198 37.4
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.1e-17 93.2 236 33.5
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 2.8e-17 92.8 167 37.7
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 6.2e-17 91.7 175 36.6
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 6.2e-17 91.7 163 38.0
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 1.1e-16 90.9 164 37.2
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.4e-16 90.5 188 36.7
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-16 90.1 130 47.7
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.8e-16 90.1 97 51.5
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 1.8e-16 90.1 188 36.2
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.8e-16 90.1 197 35.0
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.3e-16 89.7 160 38.8
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 3.1e-16 89.4 164 36.6
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 4.0e-16 89.0 188 36.2
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 8.9e-16 87.8 131 43.5
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 8.9e-16 87.8 131 45.8
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 8.9e-16 87.8 131 43.5
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 8.9e-16 87.8 169 39.1
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.2e-15 87.4 173 38.7
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.5e-15 87.0 199 35.2
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 2.0e-15 86.7 131 45.8
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 2.0e-15 86.7 164 35.4
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 4.4e-15 85.5 181 33.7
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 5.8e-15 85.1 192 35.9
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.3e-14 84.0 179 36.3
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.3e-14 84.0 185 36.2
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.2e-14 83.2 144 36.8
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 2.9e-14 82.8 189 35.4
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 6.4e-14 81.6 185 35.1
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 8.4e-14 81.3 191 35.6
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.1e-13 80.9 147 36.1
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.1e-13 80.9 199 30.2
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.4e-13 80.5 192 34.4
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 3.2e-13 79.3 167 33.5
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 3.2e-13 79.3 154 37.7
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 5.4e-13 78.6 206 33.0
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.4e-13 78.6 192 31.8
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 7.1e-13 78.2 62 64.5
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-12 77.0 136 39.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-12 77.0 136 39.7
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 4.6e-12 75.5 147 34.7
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 4.6e-12 75.5 112 42.0
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 3.9e-11 72.4 217 29.5
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.1e-10 70.9 134 31.3
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.1e-10 70.9 65 50.8
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 4.3e-10 68.9 65 50.8
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 7.3e-10 68.2 178 34.8
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 4.7e-09 65.5 52 67.3
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.8e-08 63.5 156 33.3
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 2.4e-08 63.2 112 43.8
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-08 63.2 53 56.6
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-08 63.2 53 56.6
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 3.1e-08 62.8 157 31.2
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 3.1e-08 62.8 212 26.4
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 6.8e-08 61.6 161 34.8
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 6.8e-08 61.6 130 35.4
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 1.5e-07 60.5 151 30.5
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 2.6e-07 59.7 165 30.9
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 5.8e-07 58.5 183 30.6
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 7.6e-07 58.2 157 33.8
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 2.2e-06 56.6 187 29.4
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 3.8e-06 55.8 127 33.1
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 6.4e-06 55.1 147 30.6


User provided reference genes

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