Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 0.0e+00 1958.7 996 100.0
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 4.6e-226 788.9 1089 51.1
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 9.0e-222 774.6 1172 45.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.5e-219 766.5 1137 46.4
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 9.7e-216 754.6 1170 44.7
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.4e-211 740.7 1126 46.8
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 6.7e-209 731.9 1128 46.8
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.7e-207 727.2 1119 46.4
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.1e-203 714.5 1135 45.5
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-190 671.4 1069 46.6
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 3.1e-190 669.8 1068 46.4
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 5.3e-190 669.1 1068 46.3
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.5e-187 661.0 1068 46.2
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.0e-185 654.8 1076 45.9
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 7.7e-173 612.1 1124 43.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 3.9e-164 583.2 1112 41.0
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 8.3e-159 565.5 1083 40.8
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 2.7e-157 560.5 1090 40.6
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 3.5e-157 560.1 1094 40.0
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 2.3e-156 557.4 1090 40.6
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 3.0e-156 557.0 1089 41.5
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 2.5e-155 553.9 1095 39.7
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 2.5e-155 553.9 1095 39.7
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 3.9e-140 503.4 1087 39.7
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.2e-109 402.1 1075 34.9
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 5.1e-84 317.0 665 39.5
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 8.0e-77 293.1 749 36.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 8.8e-68 263.1 1219 26.9
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 2.8e-66 258.1 274 56.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.6e-61 242.3 1263 26.8
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 2.6e-59 235.0 1228 26.4
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.8e-58 231.5 1265 26.6
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 4.5e-56 224.2 1238 26.4
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 7.7e-56 223.4 1276 25.6
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.5e-54 219.2 1240 26.5
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.4e-52 212.6 1271 24.9
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 7.5e-51 206.8 1238 26.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.7e-50 205.7 1240 25.6
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.7e-47 195.7 1269 24.9
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.6e-45 188.0 1225 24.8
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.6e-45 188.0 1229 25.3
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 5.2e-44 184.1 1253 24.7
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.5e-43 182.6 1216 26.0
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.4e-43 181.0 1229 25.2
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 3.7e-42 177.9 1238 24.0
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 3.7e-42 177.9 1276 24.1
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.9e-42 177.6 1238 24.3
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 8.3e-42 176.8 1231 24.3
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-41 175.6 1240 24.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 9.2e-41 173.3 1238 24.4
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.2e-41 173.3 1241 24.6
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.5e-40 171.4 1276 23.9
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 7.8e-40 170.2 1307 24.3
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 6.6e-39 167.2 1138 23.8
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 2.5e-38 165.2 1245 24.1
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.6e-37 162.5 1233 23.0
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 4.1e-33 147.9 1321 24.0
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 6.0e-32 144.1 899 25.9
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.9e-31 141.4 1247 23.8
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 7.3e-30 137.1 380 31.1
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.8e-28 132.5 1271 23.7
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 4.9e-26 124.4 1147 23.7
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 1.1e-25 123.2 1312 23.5
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 1.2e-24 119.8 1207 23.5
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 5.1e-23 114.4 768 25.5
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 6.6e-23 114.0 1201 22.7
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 4.3e-22 111.3 1188 23.3
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 7.3e-22 110.5 1152 22.7
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 9.6e-22 110.2 1176 22.5
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 9.6e-22 110.2 1188 22.5
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.6e-21 109.4 1190 22.9
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 8.1e-21 107.1 1114 22.0
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.4e-20 105.5 1187 23.2
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 5.2e-20 104.4 1183 22.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.2e-19 103.2 1191 21.7
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.0e-19 102.4 1195 22.3
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 3.4e-19 101.7 1197 23.1
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.3e-18 99.8 1206 22.8
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 2.2e-18 99.0 1203 23.1
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.9e-18 98.6 1195 22.0
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 4.9e-18 97.8 1229 22.3
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.4e-17 95.5 562 25.1
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 6.0e-16 90.9 1221 22.8
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.9e-15 88.2 968 23.6
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 3.9e-15 88.2 1195 21.5
BcaNung04839 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-14 86.7 67 70.1
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 7.3e-14 84.0 1157 22.0
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.3e-13 83.2 77 51.9
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.8e-13 81.3 1188 23.3
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.8e-12 79.3 246 29.3
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.8e-12 79.3 1141 21.9
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.4e-12 79.0 1179 23.7
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 6.9e-12 77.4 1161 22.4
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.2e-11 76.6 1158 22.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.2e-11 76.6 546 24.2
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.0e-11 75.9 1199 21.7
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.4e-11 75.1 60 51.7
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 4.4e-11 74.7 1206 22.3
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 7.6e-11 73.9 67 44.8
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 9.9e-11 73.6 502 25.9
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.7e-10 72.8 1183 22.5
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.2e-10 72.4 1196 23.2
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.9e-10 72.0 57 49.1
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.9e-10 72.0 1175 21.5
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.8e-10 71.6 948 23.1
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 4.9e-10 71.2 1142 23.0
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 4.9e-10 71.2 1103 22.1
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 6.4e-10 70.9 60 53.3
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.4e-10 70.9 1178 22.5
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 2.4e-09 68.9 228 27.2
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 2.4e-09 68.9 1190 21.4
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.2e-09 68.6 64 46.9
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 3.2e-09 68.6 1006 21.2
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.2e-09 68.6 116 33.6
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 7.1e-09 67.4 111 33.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 7.1e-09 67.4 1192 22.9
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.2e-08 66.6 57 47.4
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 1.2e-08 66.6 63 49.2
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.6e-08 66.2 1196 22.4
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 3.5e-08 65.1 1050 22.6
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.5e-08 65.1 1087 22.5
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 4.6e-08 64.7 693 23.4
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 4.6e-08 64.7 70 37.1
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 6.0e-08 64.3 1160 22.4
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.9e-08 63.9 369 24.9
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.9e-08 63.9 369 24.9
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.9e-08 63.9 369 24.9
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 1.0e-07 63.5 96 44.8
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 1.0e-07 63.5 59 50.8
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-07 62.8 337 25.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.9e-07 61.6 1080 20.3
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 5.1e-07 61.2 1023 21.4
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 6.6e-07 60.8 501 23.0
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 6.6e-07 60.8 1196 22.3
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.1e-06 60.1 1165 21.7
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.1e-06 60.1 564 23.8
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 1.1e-06 60.1 80 35.0
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-06 59.3 362 25.1
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 1.9e-06 59.3 109 33.0
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 2.5e-06 58.9 440 23.6
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.5e-06 58.9 57 47.4
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 4.3e-06 58.2 483 23.6
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 4.3e-06 58.2 1057 21.9
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 5.6e-06 57.8 1023 21.5
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.6e-06 57.8 1042 22.4


User provided reference genes

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