Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 4.3e-98 361.3 182 100.0
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.7e-71 272.3 178 78.7
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.7e-71 272.3 178 78.7
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.0e-70 270.4 177 78.5
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.3e-70 270.0 179 79.3
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 2.2e-70 269.2 177 78.0
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 6.5e-70 267.7 181 76.2
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 8.5e-70 267.3 176 79.0
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.1e-69 266.9 178 78.7
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 5.5e-69 264.6 177 78.5
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 8.0e-68 260.8 172 77.3
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.0e-67 258.5 178 75.8
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 3.7e-65 251.9 181 73.5
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 8.6e-62 240.7 172 72.7
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 3.3e-61 238.8 175 71.4
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.6e-60 236.5 172 71.5
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.1e-60 234.6 172 72.1
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.0e-59 233.8 180 68.3
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 5.2e-59 231.5 172 70.9
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 6.8e-59 231.1 179 67.0
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 6.8e-59 231.1 171 70.2
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.5e-58 229.9 172 69.2
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.0e-58 229.6 180 64.4
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 4.4e-58 228.4 188 62.8
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 4.4e-58 228.4 172 69.8
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 4.4e-58 228.4 174 70.1
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 5.7e-58 228.0 180 66.1
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 7.5e-58 227.6 212 58.5
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 9.8e-58 227.3 171 68.4
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 1.3e-57 226.9 173 67.1
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.3e-57 226.9 221 56.6
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.7e-57 226.5 203 59.6
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.7e-57 226.5 172 68.0
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.7e-57 226.5 174 67.2
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.9e-57 225.7 171 68.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.9e-57 224.9 178 65.7
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 6.4e-57 224.6 171 67.8
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 6.4e-57 224.6 173 68.2
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 8.3e-57 224.2 178 65.2
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 8.3e-57 224.2 174 67.8
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 8.3e-57 224.2 183 66.7
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.1e-56 223.8 171 69.0
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.8e-56 223.0 172 68.6
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.8e-56 223.0 171 66.7
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.4e-56 222.6 171 66.7
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 3.2e-56 222.2 177 66.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 4.1e-56 221.9 174 66.1
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 7.0e-56 221.1 177 65.5
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 9.2e-56 220.7 176 67.0
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.2e-55 220.3 169 68.6
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 3.5e-55 218.8 170 68.8
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 4.6e-55 218.4 170 65.3
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 5.9e-55 218.0 172 64.5
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.0e-54 217.2 171 66.1
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.7e-54 216.5 171 64.9
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.7e-54 216.5 174 63.2
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 8.6e-54 214.2 178 62.9
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.5e-53 213.4 125 85.6
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.2e-52 210.3 172 64.0
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 2.1e-52 209.5 173 65.9
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 2.8e-52 209.1 176 61.4
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.4e-51 206.8 177 62.7
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 6.8e-51 204.5 174 62.1
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.5e-50 203.4 172 58.7
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.6e-50 202.6 170 61.8
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 3.4e-50 202.2 175 58.9
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.2e-49 199.5 172 59.9
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.2e-49 199.5 172 62.2
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.9e-49 199.1 174 60.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 6.4e-49 198.0 173 61.8
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.4e-49 198.0 171 60.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.9e-48 196.4 172 61.6
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.7e-47 192.6 172 57.0
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 3.5e-47 192.2 112 83.9
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.6e-47 191.8 171 57.3
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 6.0e-47 191.4 112 83.0
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.3e-46 189.5 112 83.0
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.3e-46 189.5 111 84.7
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.9e-46 188.7 108 85.2
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 6.6e-46 188.0 171 59.1
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.5e-45 186.8 113 81.4
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.9e-45 186.4 178 55.1
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.3e-45 185.7 168 57.7
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 3.3e-45 185.7 133 73.7
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 4.3e-45 185.3 179 53.6
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 7.3e-45 184.5 168 57.7
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 7.3e-45 184.5 169 59.2
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 9.5e-45 184.1 112 81.2
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.6e-44 183.3 115 79.1
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.1e-44 183.0 172 58.7
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 3.6e-44 182.2 168 58.3
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.7e-44 181.8 176 52.3
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 4.7e-44 181.8 114 78.9
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 4.7e-44 181.8 168 56.5
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.1e-43 180.6 113 76.1
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.4e-43 180.3 111 82.0
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.4e-43 180.3 174 53.4
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.8e-43 179.9 175 56.6
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 2.3e-43 179.5 180 55.6
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.2e-42 177.2 175 52.6
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.5e-42 176.8 114 76.3
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 2.0e-42 176.4 112 79.5
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.6e-42 176.0 115 75.7
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.4e-42 175.3 126 71.4
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 9.8e-42 174.1 169 60.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 9.8e-42 174.1 170 52.9
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.7e-41 173.3 168 56.0
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 4.9e-41 171.8 142 65.5
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.4e-40 169.5 168 54.2
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.2e-40 169.1 176 49.4
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 4.1e-40 168.7 113 72.6
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.0e-38 164.1 170 52.9
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.9e-38 162.2 174 48.9
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 5.1e-38 161.8 134 64.9
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 4.3e-37 158.7 189 48.1
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-36 157.1 112 67.9
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.6e-36 155.6 172 52.3
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 4.7e-36 155.2 175 48.0
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 4.7e-36 155.2 168 50.0
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 6.8e-35 151.4 132 58.3
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 6.8e-35 151.4 149 53.7
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.3e-33 147.1 164 50.0
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.7e-33 146.7 136 54.4
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 9.2e-32 141.0 111 60.4
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.2e-31 140.6 97 68.0
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 6.0e-31 138.3 77 85.7
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 7.8e-31 137.9 179 46.4
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.0e-30 137.5 173 49.7
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 6.6e-30 134.8 172 50.6
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.9e-29 133.3 127 60.6
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 8.9e-27 124.4 171 46.2
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.3e-25 120.6 71 81.7
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 6.4e-25 118.2 134 53.0
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 8.4e-25 117.9 116 56.0
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.6e-23 113.6 110 57.3
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.7e-22 110.2 69 76.8
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.1e-22 108.6 71 73.2
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.3e-21 104.8 72 69.4
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.6e-20 103.6 176 38.1
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.5e-18 97.1 71 70.4
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.5e-18 97.1 75 58.7
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.5e-18 95.5 123 48.0
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 2.2e-17 93.2 118 48.3
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 7.1e-16 88.2 106 46.2
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 9.3e-16 87.8 55 74.5
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 4.3e-13 79.0 155 34.8
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.6e-10 69.7 51 68.6
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 4.5e-10 68.9 99 42.4
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 2.2e-09 66.6 54 64.8
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 8.4e-09 64.7 33 87.9
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 1.1e-08 64.3 37 75.7
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.4e-08 63.2 47 55.3
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.4e-08 63.2 32 84.4
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 9.3e-08 61.2 36 72.2
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.2e-07 60.8 32 81.2
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.7e-07 59.7 32 81.2
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 7.9e-07 58.2 41 63.4
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 7.9e-07 58.2 33 78.8
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 7.9e-07 58.2 39 69.2
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.8e-06 57.0 32 81.2
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 2.3e-06 56.6 38 65.8
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.3e-06 56.6 34 73.5
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 3.9e-06 55.8 106 36.8
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 5.1e-06 55.5 32 75.0


User provided reference genes

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