Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 0.0e+00 1182.5 594 100.0
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.4e-310 1068.9 598 88.5
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 6.6e-305 1050.0 597 87.6
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.3e-303 1045.8 597 86.4
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 8.1e-303 1043.1 597 86.6
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 1.1e-302 1042.7 599 86.6
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.1e-302 1042.7 599 86.1
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 4.0e-302 1040.8 597 87.9
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 5.3e-302 1040.4 600 87.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 6.9e-302 1040.0 599 88.1
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 7.6e-301 1036.6 601 87.7
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 9.9e-301 1036.2 599 87.8
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.9e-299 1031.9 599 87.1
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 1.9e-299 1031.9 601 87.0
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 2.4e-299 1031.6 599 85.6
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.6e-298 1028.9 602 86.7
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 8.7e-297 1023.1 597 86.3
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.9e-296 1021.9 597 85.1
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.3e-296 1021.1 600 85.2
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.2e-295 1016.9 597 84.4
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.5e-293 1012.3 600 84.3
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 6.0e-290 1000.3 602 83.2
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 5.1e-289 997.3 601 83.0
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.1e-288 996.1 601 82.9
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 4.3e-288 994.2 603 83.4
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.1e-287 991.9 596 83.2
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 9.0e-286 986.5 601 83.9
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 7.9e-282 973.4 597 83.1
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 7.4e-280 966.8 603 81.9
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.8e-271 938.3 567 78.7
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.8e-271 938.3 567 78.7
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 3.7e-271 937.9 519 88.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.7e-271 937.9 567 78.7
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 7.7e-269 930.2 603 79.4
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.0e-268 929.9 572 79.0
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 6.5e-268 927.2 569 77.3
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.1e-267 926.4 569 77.9
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 5.5e-267 924.1 602 74.8
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 6.1e-266 920.6 567 77.4
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 6.1e-266 920.6 567 78.0
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.4e-265 919.5 594 75.3
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.8e-265 919.1 566 77.7
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.8e-265 919.1 567 77.8
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 3.0e-265 918.3 573 77.8
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.0e-265 918.3 571 77.9
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.1e-265 917.5 567 77.8
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 8.8e-265 916.8 594 75.4
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 5.7e-264 914.1 573 77.3
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.3e-263 912.9 573 76.8
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 2.2e-263 912.1 567 77.8
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 3.7e-263 911.4 595 76.1
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 2.4e-262 908.7 567 77.1
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 4.1e-262 907.9 596 74.5
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 4.1e-262 907.9 573 74.9
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 5.3e-262 907.5 565 77.5
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 6.9e-262 907.1 574 76.5
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 6.9e-262 907.1 594 75.6
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 6.9e-262 907.1 569 76.4
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.7e-261 903.7 620 72.7
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.0e-260 903.3 603 74.1
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.8e-260 901.4 620 72.7
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.0e-260 901.0 620 72.6
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 8.5e-260 900.2 575 75.8
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 8.5e-260 900.2 568 76.6
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.4e-259 899.4 571 76.9
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 2.5e-259 898.7 594 72.7
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 5.5e-259 897.5 599 74.5
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 5.5e-259 897.5 551 76.6
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 5.5e-259 897.5 568 76.9
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.4e-259 896.7 891 56.5
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.2e-258 896.3 548 76.6
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.6e-258 896.0 586 73.5
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.1e-258 895.6 553 75.8
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 2.7e-258 895.2 574 75.1
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 1.0e-257 893.3 573 74.9
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.8e-257 892.5 620 72.1
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.3e-257 892.1 567 76.4
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.3e-257 892.1 599 73.0
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 8.8e-257 890.2 573 75.2
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 8.8e-257 890.2 576 74.7
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 8.8e-257 890.2 576 74.8
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 8.8e-257 890.2 571 75.1
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.5e-256 889.4 588 73.3
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 2.0e-256 889.0 563 74.8
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 3.3e-256 888.3 567 76.0
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 5.7e-256 887.5 555 75.9
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 7.4e-256 887.1 618 73.0
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 7.4e-256 887.1 597 72.4
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 9.7e-256 886.7 588 73.3
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 2.2e-255 885.6 566 75.1
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.2e-255 885.6 596 73.2
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.8e-255 885.2 569 74.3
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.7e-255 884.8 618 72.7
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 3.7e-255 884.8 568 74.8
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 3.7e-255 884.8 577 74.5
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 4.8e-255 884.4 561 75.0
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 6.3e-255 884.0 586 73.2
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 1.1e-254 883.2 606 72.3
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 1.8e-254 882.5 568 75.5
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 2.4e-254 882.1 573 73.8
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 5.3e-254 880.9 559 75.7
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 5.3e-254 880.9 566 74.4
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 7.0e-254 880.6 566 75.3
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 7.0e-254 880.6 573 73.8
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.6e-253 879.4 599 72.1
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 2.6e-253 878.6 591 72.9
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 3.5e-253 878.2 602 72.8
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 7.7e-253 877.1 599 72.3
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.6e-250 869.4 594 71.5
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 8.0e-250 867.1 614 70.7
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 6.7e-249 864.0 539 76.1
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 2.2e-247 859.0 545 76.1
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 2.2e-247 859.0 567 73.7
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 8.2e-247 857.1 597 70.9
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.4e-246 856.3 596 70.8
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.6e-245 852.8 603 69.7
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 5.9e-245 850.9 701 62.9
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 3.0e-241 838.6 557 73.4
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 5.0e-236 821.2 632 67.4
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 5.5e-235 817.8 576 70.5
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.6e-232 808.9 519 76.1
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 5.0e-228 794.7 555 69.0
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 4.9e-223 778.1 583 65.9
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 5.6e-219 764.6 932 48.0
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 9.5e-219 763.8 496 74.8
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 3.7e-207 725.3 601 60.4
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 3.9e-204 715.3 567 63.0
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.0e-201 705.3 566 62.9
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.6e-192 676.0 514 66.5
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.7e-191 673.3 563 57.9
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 3.8e-191 672.2 399 79.7
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.8e-186 656.0 434 79.5
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.1e-182 644.0 469 67.0
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 4.2e-166 589.0 340 84.7
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.5e-155 553.1 568 50.5
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.7e-151 540.4 444 69.4
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.2e-149 534.3 422 65.6
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.0e-132 478.0 307 76.9
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 1.5e-115 421.0 348 58.9
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 2.7e-104 383.6 432 46.3
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.2e-98 364.0 525 37.9
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 4.6e-96 356.3 468 42.5
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 4.6e-88 329.7 244 69.7
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 8.6e-87 325.5 221 74.7
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 9.6e-78 295.4 176 81.2
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 3.1e-76 290.4 202 66.8
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.2e-75 288.5 603 33.0
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.3e-69 268.5 215 59.5
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.3e-69 268.5 215 59.5
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 3.8e-66 256.9 364 35.2
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.9e-62 244.6 158 70.9
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.3e-61 241.9 165 69.1
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 6.7e-47 193.0 234 48.7
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.6e-43 181.0 109 83.5
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.3e-31 141.4 156 50.6
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 2.3e-31 141.4 156 50.6
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.4e-28 131.3 72 84.7
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 2.9e-26 124.4 110 57.3
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.1e-16 91.7 49 81.6
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.1e-16 91.7 49 81.6
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 4.7e-16 90.5 105 53.3
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 9.7e-14 82.8 42 88.1
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 1.7e-13 82.0 42 85.7
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 3.5e-11 74.3 48 66.7
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 2.3e-07 61.6 77 46.8
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 4.0e-07 60.8 51 68.6


User provided reference genes

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