Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 4.7e-147 525.8 647 100.0
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 2.5e-87 327.4 656 81.6
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 1.9e-79 301.2 661 80.3
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 4.0e-77 293.5 657 79.9
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 3.7e-75 287.0 662 79.2
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 2.6e-68 264.2 644 70.7
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 3.4e-68 263.8 644 72.8
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 3.4e-68 263.8 644 72.8
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 8.3e-67 259.2 229 61.1
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 1.4e-66 258.5 651 67.0
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 2.0e-65 254.6 638 72.4
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 1.6e-62 245.0 656 76.2
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 1.1e-34 152.5 107 66.4
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 1.7e-32 145.2 174 46.0
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 5.1e-32 143.7 178 43.8
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 6.6e-32 143.3 174 45.4
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 1.5e-31 142.1 229 44.5
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 1.5e-28 132.1 174 40.8
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 7.6e-28 129.8 174 39.7
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 7.6e-28 129.8 182 37.9
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 9.9e-28 129.4 174 39.7
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 1.7e-27 128.6 172 41.9
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 1.4e-26 125.6 161 42.9
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 2.4e-26 124.8 175 40.0
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 3.2e-26 124.4 180 37.2
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 5.4e-26 123.6 170 42.9
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 7.1e-26 123.2 200 38.0
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 9.3e-26 122.9 164 37.8
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 1.2e-25 122.5 175 40.6
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 1.2e-25 122.5 159 42.1
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.1e-25 121.7 177 35.6
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 2.7e-25 121.3 163 40.5
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 4.6e-25 120.6 182 39.6
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 6.0e-25 120.2 171 36.8
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 7.8e-25 119.8 163 40.5
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 3.0e-24 117.9 171 37.4
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 3.9e-24 117.5 155 43.2
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 1.5e-23 115.5 163 37.4
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 3.3e-23 114.4 176 35.8
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 5.6e-23 113.6 175 34.9
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 2.8e-22 111.3 141 43.3
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 2.4e-21 108.2 163 34.4
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 3.1e-21 107.8 166 36.1
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 4.0e-21 107.5 170 32.9
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 4.0e-21 107.5 152 38.8
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 5.3e-21 107.1 182 33.5
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 9.0e-21 106.3 175 35.4
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 1.2e-20 105.9 175 33.1
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 5.8e-20 103.6 162 36.4
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 7.6e-20 103.2 175 34.9
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 7.6e-20 103.2 148 41.2
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 7.6e-20 103.2 148 41.2
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 7.6e-20 103.2 148 41.2
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 7.6e-20 103.2 95 47.4
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 9.9e-20 102.8 152 37.5
TPR.G27557 Trifolium pratense HOM05D007763 ORTHO05D009537 9.9e-20 102.8 94 46.8
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 1.1e-18 99.4 180 31.1
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 2.4e-18 98.2 173 31.8
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 4.2e-18 97.4 154 39.0
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.1e-17 95.1 175 30.3
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 1.7e-16 92.0 104 43.3
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 2.3e-16 91.7 103 41.7
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 6.6e-16 90.1 95 44.2
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 3.3e-15 87.8 107 42.1
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 5.6e-15 87.0 69 53.6
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 2.1e-14 85.1 142 35.2
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 3.6e-14 84.3 68 52.9
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 3.6e-14 84.3 133 34.6
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 2.4e-13 81.6 112 39.3
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 2.4e-13 81.6 118 34.7
Atru.chr12.1659 Acer truncatum HOM05D007763 ORTHO05D009537 9.0e-13 79.7 73 52.1
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 2.6e-12 78.2 139 32.4
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 4.9e-11 73.9 125 36.8
Medtr3g037490 Medicago truncatula HOM05D007763 ORTHO05D009537 8.4e-11 73.2 63 52.4
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 2.4e-10 71.6 168 30.4
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 3.2e-10 71.2 103 40.8
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 4.2e-10 70.9 80 42.5
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 7.1e-10 70.1 132 34.8
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 3.5e-09 67.8 102 35.3
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 3.5e-09 67.8 83 39.8
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 7.9e-09 66.6 157 28.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.3e-08 65.9 152 25.7
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 1.8e-08 65.5 73 39.7
ECA246G2275 Erigeron canadensis HOM05D007763 ORTHO05D009537 2.3e-08 65.1 71 40.8
vmacro17568 Vaccinium macrocarpon HOM05D007763 ORTHO05D009537 2.3e-08 65.1 81 38.3
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 8.7e-08 63.2 94 35.1
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 2.5e-07 61.6 144 30.6
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 9.6e-07 59.7 159 25.2
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 1.3e-06 59.3 149 28.2
Nitab4.5_0003021g0070 Nicotiana tabacum HOM05D007763 ORTHO05D009537 1.3e-06 59.3 68 38.2
Nitab4.5_0004286g0010 Nicotiana tabacum HOM05D007763 ORTHO05D009537 1.6e-06 58.9 74 36.5
CAN.G587.9 Capsicum annuum HOM05D007763 ORTHO05D009537 3.7e-06 57.8 111 34.2
COL.COLO4_17790 Corchorus olitorius HOM05D007675 ORTHO05D009699 3.7e-06 57.8 80 36.2
Gohir.A12G253033 Gossypium hirsutum HOM05D000001 ORTHO05D000003 3.7e-06 57.8 91 30.8
ATR0582G312 Amborella trichopoda HOM05D000001 ORTHO05D000003 6.2e-06 57.0 92 30.4
Gohir.A12G053300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 8.1e-06 56.6 122 27.0
Os09g0417500 Oryza sativa ssp. japonica HOM05D007763 ORTHO05D009537 8.1e-06 56.6 77 39.0


User provided reference genes

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