Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G1920 Aethionema arabicum HOM05D002766 ORTHO05D002809 3.2e-160 568.5 321 100.0
Sp2g24690 Schrenkiella parvula HOM05D002766 ORTHO05D002809 5.4e-59 232.3 290 52.4
Thhalv10004733m.g Eutrema salsugineum HOM05D002766 ORTHO05D002809 3.9e-57 226.1 232 59.5
AL8G38180 Arabidopsis lyrata HOM05D002766 ORTHO05D002809 6.6e-57 225.3 303 50.5
AT5G61490 Arabidopsis thaliana HOM05D002766 ORTHO05D002809 9.5e-56 221.5 226 58.4
Carub.0008s2218 Capsella rubella HOM05D002766 ORTHO05D002809 2.3e-54 216.9 233 57.1
BraA03t13836Z Brassica rapa HOM05D002766 ORTHO05D002809 3.1e-54 216.5 297 49.5
A03p47090 Brassica napus HOM05D002766 ORTHO05D002809 5.2e-54 215.7 297 49.5
C07p45200 Brassica napus HOM05D002766 ORTHO05D002809 5.2e-54 215.7 286 50.7
BcaC06g33154 Brassica carinata HOM05D002766 ORTHO05D002809 1.2e-53 214.5 288 50.0
BcaC06g33157 Brassica carinata HOM05D002766 ORTHO05D002809 1.2e-53 214.5 285 49.8
BolC7t45043H Brassica oleracea HOM05D002766 ORTHO05D002809 2.0e-53 213.8 226 57.1
CARHR275260 Cardamine hirsuta HOM05D002766 ORTHO05D002809 2.0e-50 203.8 303 47.5
THA.LOC104818512 Tarenaya hassleriana HOM05D002766 ORTHO05D002809 8.1e-39 165.2 263 42.2
Ciclev10005283m.g Citrus clementina HOM05D002766 ORTHO05D002809 1.5e-24 117.9 274 35.8
Cfa012925 Carpinus fangiana HOM05D002766 ORTHO05D002809 3.3e-24 116.7 296 35.5
THA.LOC104825057 Tarenaya hassleriana HOM05D002766 ORTHO05D002809 5.6e-24 115.9 247 35.2
A01p16430 Brassica napus HOM05D002766 ORTHO05D002809 1.6e-23 114.4 249 36.9
BcaC09g50801 Brassica carinata HOM05D002766 ORTHO05D002809 2.1e-23 114.0 249 35.7
C01p20580 Brassica napus HOM05D002766 ORTHO05D002809 2.1e-23 114.0 249 35.7
QL02p025713 Quercus lobata HOM05D002766 ORTHO05D002809 3.6e-23 113.2 220 37.3
BcaNung04006 Brassica carinata HOM05D002766 ORTHO05D002809 4.8e-23 112.8 250 37.2
Thhalv10025619m.g Eutrema salsugineum HOM05D002766 ORTHO05D002809 8.1e-23 112.1 246 35.4
Duzib084G0704 Durio zibethinus HOM05D002766 ORTHO05D002809 1.1e-22 111.7 312 31.1
Hma1.2p1_0432F.1_g151920 Hydrangea macrophylla HOM05D002766 ORTHO05D002809 3.1e-22 110.2 314 30.6
Aa31LG7G10410 Aethionema arabicum HOM05D002766 ORTHO05D002809 4.0e-22 109.8 234 36.8
Prupe.2G275300 Prunus persica HOM05D002766 ORTHO05D002809 5.3e-22 109.4 302 32.8
Carub.0007s1586 Capsella rubella HOM05D002766 ORTHO05D002809 1.5e-21 107.8 246 34.1
AL7G27980 Arabidopsis lyrata HOM05D002766 ORTHO05D002809 4.4e-21 106.3 249 34.9
AT4G25170 Arabidopsis thaliana HOM05D002766 ORTHO05D002809 5.8e-21 105.9 249 33.3
THA.LOC104808277 Tarenaya hassleriana HOM05D002766 ORTHO05D002809 5.8e-21 105.9 240 33.3
BcaB03g12457 Brassica carinata HOM05D002766 ORTHO05D002809 1.3e-20 104.8 213 35.7
BraA01t01598Z Brassica rapa HOM05D002766 ORTHO05D002809 1.3e-20 104.8 268 35.1
Manes.14G037400 Manihot esculenta HOM05D002766 ORTHO05D002809 2.2e-20 104.0 262 31.7
Atru.chr1.819 Acer truncatum HOM05D002766 ORTHO05D002809 2.9e-20 103.6 258 32.9
PGR042G3253 Punica granatum HOM05D002766 ORTHO05D002809 2.9e-20 103.6 256 32.8
BolC1t01988H Brassica oleracea HOM05D002766 ORTHO05D002809 3.8e-20 103.2 269 33.8
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 4.9e-20 102.8 194 35.6
Duzib205G1127 Durio zibethinus HOM05D002766 ORTHO05D002809 4.9e-20 102.8 263 32.3
BcaC07g38177 Brassica carinata HOM05D002766 ORTHO05D002809 8.4e-20 102.1 195 35.9
BolC8t48599H Brassica oleracea HOM05D002766 ORTHO05D002809 8.4e-20 102.1 195 35.9
MD01G1181500 Malus domestica HOM05D002766 ORTHO05D002809 8.4e-20 102.1 255 33.7
vmacro22809 Vaccinium macrocarpon HOM05D002766 ORTHO05D002809 8.4e-20 102.1 320 31.6
Eucgr.A02904 Eucalyptus grandis HOM05D002766 ORTHO05D002809 1.9e-19 100.9 227 34.4
MD01G1181400 Malus domestica HOM05D002766 ORTHO05D002809 4.2e-19 99.8 298 32.9
Sc25g0000010 Simmondsia chinensis HOM05D002766 ORTHO05D002809 4.2e-19 99.8 203 34.0
Oeu017784.1 Olea europaea HOM05D002766 ORTHO05D002809 5.4e-19 99.4 232 33.2
Sopen03g024140 Solanum pennellii HOM05D002766 ORTHO05D002809 5.4e-19 99.4 230 29.6
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 7.1e-19 99.0 141 41.8
CANSAT56G2422 Cannabis sativa HOM05D002766 ORTHO05D002809 7.1e-19 99.0 288 29.9
Rhsim03G0165400 Rhododendron simsii HOM05D002766 ORTHO05D002809 7.1e-19 99.0 285 29.8
Sc26g0000010 Simmondsia chinensis HOM05D002766 ORTHO05D002809 2.1e-18 97.4 203 33.5
Manes.06G133000 Manihot esculenta HOM05D002766 ORTHO05D002809 2.7e-18 97.1 240 32.1
CARHR232560 Cardamine hirsuta HOM05D002766 ORTHO05D002809 4.6e-18 96.3 168 39.9
Potri.001G126300 Populus trichocarpa HOM05D002766 ORTHO05D002809 4.6e-18 96.3 255 31.8
ECA233G0134 Erigeron canadensis HOM05D002766 ORTHO05D002809 6.0e-18 95.9 313 30.7
Gohir.D11G043100 Gossypium hirsutum HOM05D002766 ORTHO05D002809 6.0e-18 95.9 301 29.9
Dinv06576 Davidia involucrata HOM05D002766 ORTHO05D002809 7.8e-18 95.5 230 34.3
Gorai.007G046400 Gossypium raimondii HOM05D002766 ORTHO05D002809 7.8e-18 95.5 301 29.6
TWI23G0718 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 7.8e-18 95.5 301 31.6
Sp7g23180 Schrenkiella parvula HOM05D002766 ORTHO05D002809 1.0e-17 95.1 164 37.2
TWI14G0760 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 1.0e-17 95.1 256 33.6
Nitab4.5_0001358g0090 Nicotiana tabacum HOM05D002766 ORTHO05D002809 1.3e-17 94.7 322 25.8
Rhsim09G0190500 Rhododendron simsii HOM05D002766 ORTHO05D002809 1.3e-17 94.7 299 32.8
Solyc03g093340.4 Solanum lycopersicum HOM05D002766 ORTHO05D002809 1.3e-17 94.7 230 29.6
CsaV3_5G001260 Cucumis sativus L. HOM05D002766 ORTHO05D002809 2.3e-17 94.0 244 32.0
Gohir.A11G039800 Gossypium hirsutum HOM05D002766 ORTHO05D002809 2.3e-17 94.0 301 28.9
PGSC0003DMG400018857 Solanum tuberosum HOM05D002766 ORTHO05D002809 2.3e-17 94.0 296 27.0
Actinidia24989 Actinidia chinensis HOM05D002766 ORTHO05D002809 3.0e-17 93.6 172 37.2
MELO3C005821.2 Cucumis melo HOM05D002766 ORTHO05D002809 3.0e-17 93.6 245 34.3
Migut.F00490 Erythranthe guttata HOM05D002766 ORTHO05D002809 3.0e-17 93.6 213 35.2
Cc02_g04440 Coffea canephora HOM05D002766 ORTHO05D002809 3.9e-17 93.2 248 34.3
MD07G1251500 Malus domestica HOM05D002766 ORTHO05D002809 3.9e-17 93.2 301 31.2
Peaxi162Scf00271g00833 Petunia axillaris HOM05D002766 ORTHO05D002809 5.1e-17 92.8 325 26.5
TAR375G0286 Trochodendron aralioides HOM05D002766 ORTHO05D002809 5.1e-17 92.8 218 35.8
Actinidia01048 Actinidia chinensis HOM05D002766 ORTHO05D002809 6.6e-17 92.4 217 33.6
Thecc.03G152900 Theobroma cacao HOM05D002766 ORTHO05D002809 8.7e-17 92.0 260 30.8
Haze_21282 Corylus avellana HOM05D002766 ORTHO05D002809 1.9e-16 90.9 239 30.5
RcHm_v2.0_Chr1g0374081 Rosa chinensis HOM05D002766 ORTHO05D002809 3.3e-16 90.1 257 32.3
GSVIVG01014040001 Vitis vinifera HOM05D002766 ORTHO05D002809 7.3e-16 89.0 270 27.8
DCAR_020182 Daucus carota HOM05D002766 ORTHO05D002809 9.6e-16 88.6 305 30.2
Hund11841 Selenicereus undatus HOM05D002766 ORTHO05D002809 9.6e-16 88.6 251 29.9
CAN.G48.48 Capsicum annuum HOM05D002766 ORTHO05D002809 1.6e-15 87.8 335 26.0
ClCG01G001130 Citrullus lanatus HOM05D002766 ORTHO05D002809 2.8e-15 87.0 241 33.2
TWI39G0974 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 2.8e-15 87.0 309 30.4
Nitab4.5_0001267g0160 Nicotiana tabacum HOM05D002766 ORTHO05D002809 3.6e-15 86.7 323 26.3
Sabra01G0097400 Salix brachista HOM05D002766 ORTHO05D002809 3.6e-15 86.7 257 30.0
Sabra03G0074200 Salix brachista HOM05D002766 ORTHO05D002809 3.6e-15 86.7 258 30.6
Lsat_1_v5_gn_8_10400 Lactuca sativa HOM05D002766 ORTHO05D002809 4.8e-15 86.3 259 33.2
Potri.003G107400 Populus trichocarpa HOM05D002766 ORTHO05D002809 1.8e-14 84.3 260 30.0
HanXRQChr05g0142591 Helianthus annuus HOM05D002766 ORTHO05D002809 2.4e-14 84.0 295 29.2
FAN01G2484 Fragaria x ananassa HOM05D002766 ORTHO05D002809 3.1e-14 83.6 256 30.9
Sed0017911 Sechium edule HOM05D002766 ORTHO05D002809 4.0e-14 83.2 170 34.7
FvH4_7g27250 Fragaria vesca HOM05D002766 ORTHO05D002809 6.9e-14 82.4 257 31.1
FAN06G1573 Fragaria x ananassa HOM05D002766 ORTHO05D002809 6.9e-14 82.4 261 31.0
FAN06G5039 Fragaria x ananassa HOM05D002766 ORTHO05D002809 6.9e-14 82.4 261 31.0
FAN10G0777 Fragaria x ananassa HOM05D002766 ORTHO05D002809 6.9e-14 82.4 257 31.1
MSTRG.133 Avicennia marina HOM05D002766 ORTHO05D002809 1.5e-13 81.3 262 27.9
Migut.F01190 Erythranthe guttata HOM05D002766 ORTHO05D002809 1.5e-13 81.3 280 28.6
Medtr4g036465 Medicago truncatula HOM05D002766 ORTHO05D002809 1.5e-13 81.3 214 30.4
SalBow2G0493 Salvia bowleyana HOM05D002766 ORTHO05D002809 1.5e-13 81.3 215 34.9
vmacro09914 Vaccinium macrocarpon HOM05D002766 ORTHO05D002809 2.0e-13 80.9 170 34.1
DCAR_018118 Daucus carota HOM05D002766 ORTHO05D002809 2.6e-13 80.5 302 25.5
MD07G1251600 Malus domestica HOM05D002766 ORTHO05D002809 4.5e-13 79.7 155 36.8
ECA238G1863 Erigeron canadensis HOM05D002766 ORTHO05D002809 5.8e-13 79.3 215 32.1
Lsat_1_v5_gn_2_128541 Lactuca sativa HOM05D002766 ORTHO05D002809 5.8e-13 79.3 274 29.9
Lj1A977T69 Lonicera japonica HOM05D002766 ORTHO05D002809 7.6e-13 79.0 274 31.0
GSVIVG01026926001 Vitis vinifera HOM05D002766 ORTHO05D002809 1.3e-12 78.2 80 47.5
Zm00001eb249490 Zea mays HOM05D002766 ORTHO05D002809 1.7e-12 77.8 220 27.3
EL10Ac3g05862 Beta vulgaris HOM05D002766 ORTHO05D002809 2.9e-12 77.0 202 29.7
FAN03G2268 Fragaria x ananassa HOM05D002766 ORTHO05D002809 3.8e-12 76.6 256 30.1
PSO782G1550 Papaver somniferum HOM05D002766 ORTHO05D002809 3.8e-12 76.6 117 41.9
PSO063G4256 Papaver somniferum HOM05D002766 ORTHO05D002809 4.9e-12 76.3 187 33.2
arahy.Tifrunner.gnm1.ann1.C8D70D Arachis hypogaea HOM05D002766 ORTHO05D002809 8.4e-12 75.5 241 32.4
Nn1g00944 Nelumbo nucifera HOM05D002766 ORTHO05D002809 8.4e-12 75.5 213 34.3
Os02g0657700 Oryza sativa ssp. japonica HOM05D002766 ORTHO05D002809 1.9e-11 74.3 198 33.3
Psat3g167080 Pisum sativum HOM05D002766 ORTHO05D002809 1.9e-11 74.3 169 32.5
AUR62002227 Chenopodium quinoa HOM05D002766 ORTHO05D002809 2.4e-11 73.9 194 30.9
Zm00001eb186540 Zea mays HOM05D002766 ORTHO05D002809 2.4e-11 73.9 186 31.2
Ah.10g031490 Amaranthus hybridus HOM05D002766 ORTHO05D002809 5.4e-11 72.8 199 27.1
arahy.Tifrunner.gnm1.ann1.EL3WER Arachis hypogaea HOM05D002766 ORTHO05D002809 5.4e-11 72.8 274 30.3
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 5.4e-11 72.8 300 30.7
Aqoxy5G03825 Aquilegia oxysepala HOM05D002766 ORTHO05D002809 7.1e-11 72.4 252 30.6
Eucgr.K00169 Eucalyptus grandis HOM05D002766 ORTHO05D002809 1.2e-10 71.6 164 34.8
Lalb_Chr01g0000251 Lupinus albus HOM05D002766 ORTHO05D002809 1.2e-10 71.6 221 30.8
Lj3g0017052 Lotus japonicus HOM05D002766 ORTHO05D002809 2.7e-10 70.5 265 29.1
Dinv44099 Davidia involucrata HOM05D002766 ORTHO05D002809 7.9e-10 68.9 186 29.6
Ca_12620_v3 Cicer arietinum L. HOM05D002766 ORTHO05D002809 1.0e-09 68.6 220 28.6
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 1.3e-09 68.2 258 27.5
Actinidia13587 Actinidia chinensis HOM05D002766 ORTHO05D002809 1.8e-09 67.8 200 30.5
Os04g0550700 Oryza sativa ssp. japonica HOM05D002766 ORTHO05D002809 1.8e-09 67.8 154 31.2
TPR.G3654 Trifolium pratense HOM05D002766 ORTHO05D002809 1.8e-09 67.8 223 27.4
ATR0057G106 Amborella trichopoda HOM05D002766 ORTHO05D002809 2.3e-09 67.4 271 27.3
RcHm_v2.0_Chr5g0058361 Rosa chinensis HOM05D002766 ORTHO05D002809 2.3e-09 67.4 163 35.0
COL.COLO4_12453 Corchorus olitorius HOM05D002766 ORTHO05D002809 3.0e-09 67.0 232 27.2
CANSAT21G0262 Cannabis sativa HOM05D002766 ORTHO05D002809 5.1e-09 66.2 129 34.9
QL04p035311 Quercus lobata HOM05D002766 ORTHO05D002809 5.1e-09 66.2 203 27.1
TAR374G1017 Trochodendron aralioides HOM05D002766 ORTHO05D002809 5.1e-09 66.2 62 53.2
HanXRQChr14g0461291 Helianthus annuus HOM05D002766 ORTHO05D002809 6.7e-09 65.9 118 40.7
Peaxi162Scf00377g00720 Petunia axillaris HOM05D002766 ORTHO05D002809 8.7e-09 65.5 203 26.6
GSVIVG01018215001 Vitis vinifera HOM05D002766 ORTHO05D002809 8.7e-09 65.5 208 27.9
CiPaw.08G001700 Carya illinoinensis HOM05D002766 ORTHO05D002809 1.1e-08 65.1 165 37.0
Cc03_g10490 Coffea canephora HOM05D002766 ORTHO05D002809 1.1e-08 65.1 161 27.3
Phvul.011G006900 Phaseolus vulgaris HOM05D002766 ORTHO05D002809 1.5e-08 64.7 172 30.2
Glyma.12G006100 Glycine max HOM05D002766 ORTHO05D002809 1.9e-08 64.3 215 26.0
PGR105G0004 Punica granatum HOM05D002766 ORTHO05D002809 1.9e-08 64.3 169 29.0
Cpa.g.sc13.284 Carica papaya HOM05D002766 ORTHO05D002809 2.5e-08 63.9 118 38.1
CiPaw.08G001600 Carya illinoinensis HOM05D002766 ORTHO05D002809 2.5e-08 63.9 118 36.4
Rhsim01G0136600 Rhododendron simsii HOM05D002766 ORTHO05D002809 2.5e-08 63.9 199 25.1
RhsimUnG0213800 Rhododendron simsii HOM05D002766 ORTHO05D002809 2.5e-08 63.9 199 25.1
FAN03G1252 Fragaria x ananassa HOM05D002766 ORTHO05D002809 4.3e-08 63.2 243 28.8
RcHm_v2.0_Chr5g0046391 Rosa chinensis HOM05D002766 ORTHO05D002809 4.3e-08 63.2 72 50.0
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 5.6e-08 62.8 245 25.7
COL.COLO4_14095 Corchorus olitorius HOM05D002766 ORTHO05D002809 7.4e-08 62.4 121 33.9
FAN01G1320 Fragaria x ananassa HOM05D002766 ORTHO05D002809 7.4e-08 62.4 161 28.0
Potri.014G057200 Populus trichocarpa HOM05D002766 ORTHO05D002809 7.4e-08 62.4 158 28.5
VMungo1127G1434 Vigna mungo HOM05D002766 ORTHO05D002809 7.4e-08 62.4 171 28.7
FAN03G0744 Fragaria x ananassa HOM05D002766 ORTHO05D002809 9.6e-08 62.0 270 25.2
TWI59G1018 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 1.3e-07 61.6 144 30.6
Duzib138G1521 Durio zibethinus HOM05D002766 ORTHO05D002809 2.1e-07 60.8 245 26.1
RcHm_v2.0_Chr1g0348271 Rosa chinensis HOM05D002766 ORTHO05D002809 2.1e-07 60.8 279 24.4
Nitab4.5_0003110g0010 Nicotiana tabacum HOM05D002766 ORTHO05D002809 2.8e-07 60.5 169 26.6
FvH4_7g10480 Fragaria vesca HOM05D002766 ORTHO05D002809 3.7e-07 60.1 268 24.3
Gorai.007G087400 Gossypium raimondii HOM05D002766 ORTHO05D002809 3.7e-07 60.1 202 28.7
arahy.Tifrunner.gnm1.ann1.LW2ET0 Arachis hypogaea HOM05D002766 ORTHO05D002809 4.8e-07 59.7 209 28.7
Migut.F00491 Erythranthe guttata HOM05D002766 ORTHO05D002809 4.8e-07 59.7 223 29.6
Cfa011123 Carpinus fangiana HOM05D002766 ORTHO05D002809 6.2e-07 59.3 132 29.5
Gohir.D11G081700 Gossypium hirsutum HOM05D002766 ORTHO05D002809 6.2e-07 59.3 206 29.6
vmacro21045 Vaccinium macrocarpon HOM05D002766 ORTHO05D002809 6.2e-07 59.3 162 25.9
Prupe.2G134300 Prunus persica HOM05D002766 ORTHO05D002809 8.1e-07 58.9 170 26.5
CSS0041067 Camellia sinensis var. sinensis HOM05D002766 ORTHO05D002809 1.1e-06 58.5 134 29.1
CARHR234670 Cardamine hirsuta HOM05D002766 ORTHO05D002809 1.4e-06 58.2 45 68.9
FAN10G2405 Fragaria x ananassa HOM05D002766 ORTHO05D002809 1.8e-06 57.8 241 24.5
FAN10G4250 Fragaria x ananassa HOM05D002766 ORTHO05D002809 1.8e-06 57.8 241 24.5
Sopen01g036410 Solanum pennellii HOM05D002766 ORTHO05D002809 1.8e-06 57.8 172 26.2
Gohir.A11G077300 Gossypium hirsutum HOM05D002766 ORTHO05D002809 2.4e-06 57.4 199 29.6
FAN06G2231 Fragaria x ananassa HOM05D002766 ORTHO05D002809 3.1e-06 57.0 273 23.1
FAN06G4178 Fragaria x ananassa HOM05D002766 ORTHO05D002809 4.0e-06 56.6 274 22.6
Nitab4.5_0001823g0050 Nicotiana tabacum HOM05D002766 ORTHO05D002809 4.0e-06 56.6 165 24.8
Atru.chr5.197 Acer truncatum HOM05D002766 ORTHO05D002809 5.3e-06 56.2 276 27.9
Glyma.01G074800 Glycine max HOM05D002766 ORTHO05D002809 5.3e-06 56.2 180 27.2
PGSC0003DMG400025980 Solanum tuberosum HOM05D002766 ORTHO05D002809 5.3e-06 56.2 213 24.9
CAN.G899.25 Capsicum annuum HOM05D002766 ORTHO05D002809 6.9e-06 55.8 211 24.6
Lj1g0000551 Lotus japonicus HOM05D002766 ORTHO05D002809 6.9e-06 55.8 151 26.5
Nn6g33893 Nelumbo nucifera HOM05D002766 ORTHO05D002809 6.9e-06 55.8 115 35.7
Psat3g158080 Pisum sativum HOM05D002766 ORTHO05D002809 9.0e-06 55.5 209 26.8
TPR.G39117 Trifolium pratense HOM05D002766 ORTHO05D002809 9.0e-06 55.5 212 25.9


User provided reference genes

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