Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G1630 Aethionema arabicum HOM05D002266 ORTHO05D010337 9.8e-220 766.5 397 100.0
Carub.0008s2256 Capsella rubella HOM05D002266 ORTHO05D010337 2.5e-146 522.7 420 65.7
AL8G38630 Arabidopsis lyrata HOM05D002266 ORTHO05D010337 1.8e-144 516.5 421 67.0
Thhalv10005642m.g Eutrema salsugineum HOM05D002266 ORTHO05D010337 2.3e-144 516.2 417 66.9
CARHR275630 Cardamine hirsuta HOM05D002266 ORTHO05D010337 5.1e-144 515.0 419 65.4
AT5G61865 Arabidopsis thaliana HOM05D002266 ORTHO05D010337 9.7e-143 510.8 420 66.9
Sp2g25060 Schrenkiella parvula HOM05D002266 ORTHO05D010337 2.2e-142 509.6 421 65.6
BcaC01g02442 Brassica carinata HOM05D002266 ORTHO05D010337 3.3e-135 485.7 420 63.1
C03p65250 Brassica napus HOM05D002266 ORTHO05D010337 3.3e-135 485.7 420 63.1
BolC3t18778H Brassica oleracea HOM05D002266 ORTHO05D010337 3.3e-135 485.7 420 63.1
A06p28540 Brassica napus HOM05D002266 ORTHO05D010337 1.1e-133 480.7 420 62.9
BraA06t25800Z Brassica rapa HOM05D002266 ORTHO05D010337 1.3e-131 473.8 414 63.3
BcaB02g09608 Brassica carinata HOM05D002266 ORTHO05D010337 8.5e-131 471.1 417 62.8
THA.LOC104818284 Tarenaya hassleriana HOM05D002266 ORTHO05D010337 3.3e-90 336.3 422 49.3
Ciclev10033782m.g Citrus clementina HOM05D002266 ORTHO05D010337 1.8e-64 250.8 391 40.7
Duzib205G1981 Durio zibethinus HOM05D002266 ORTHO05D010337 2.2e-62 243.8 395 40.8
Gohir.A07G046600 Gossypium hirsutum HOM05D002266 ORTHO05D010337 4.2e-61 239.6 421 39.0
Sabra12G0079800 Salix brachista HOM05D002266 ORTHO05D010337 5.4e-61 239.2 397 40.1
Potri.012G108900 Populus trichocarpa HOM05D002266 ORTHO05D010337 9.3e-61 238.4 386 41.7
Hma1.2p1_0452F.1_g155980 Hydrangea macrophylla HOM05D002266 ORTHO05D010337 1.5e-58 231.1 384 39.6
Manes.14G044300 Manihot esculenta HOM05D002266 ORTHO05D010337 1.3e-57 228.0 389 39.1
Gohir.D07G050900 Gossypium hirsutum HOM05D002266 ORTHO05D010337 2.1e-57 227.3 421 38.5
Gorai.001G054000 Gossypium raimondii HOM05D002266 ORTHO05D010337 2.1e-57 227.3 421 38.5
Lj5C86T8 Lonicera japonica HOM05D002266 ORTHO05D010337 2.1e-57 227.3 400 38.5
Thecc.03G141000 Theobroma cacao HOM05D002266 ORTHO05D010337 4.8e-57 226.1 402 39.3
Prupe.5G140800 Prunus persica HOM05D002266 ORTHO05D010337 6.9e-56 222.2 395 38.7
QL10p000420 Quercus lobata HOM05D002266 ORTHO05D010337 3.4e-55 219.9 392 38.8
DCAR_025647 Daucus carota HOM05D002266 ORTHO05D010337 2.2e-54 217.2 401 37.7
MD14G1146800 Malus domestica HOM05D002266 ORTHO05D010337 6.4e-54 215.7 354 39.3
TWI23G1291 Tripterygium wilfordii HOM05D002266 ORTHO05D010337 5.4e-53 212.6 395 36.5
Atru.chr6.1922 Acer truncatum HOM05D002266 ORTHO05D010337 6.0e-52 209.1 435 37.7
Atru.chr6.1924 Acer truncatum HOM05D002266 ORTHO05D010337 6.0e-52 209.1 435 37.7
Cpa.g.sc13.178 Carica papaya HOM05D002266 ORTHO05D010337 1.3e-51 208.0 267 46.4
Migut.D01181 Erythranthe guttata HOM05D002266 ORTHO05D010337 2.3e-51 207.2 417 35.0
COL.COLO4_37262 Corchorus olitorius HOM05D002266 ORTHO05D010337 3.9e-51 206.5 295 41.4
Rhsim08G0198000 Rhododendron simsii HOM05D002266 ORTHO05D010337 2.1e-49 200.7 426 32.9
HanXRQChr05g0155381 Helianthus annuus HOM05D002266 ORTHO05D010337 3.1e-48 196.8 403 35.0
RcHm_v2.0_Chr7g0188601 Rosa chinensis HOM05D002266 ORTHO05D010337 3.2e-45 186.8 392 35.7
Nitab4.5_0008403g0020 Nicotiana tabacum HOM05D002266 ORTHO05D010337 5.5e-45 186.0 383 34.2
Nitab4.5_0002584g0010 Nicotiana tabacum HOM05D002266 ORTHO05D010337 7.1e-45 185.7 391 34.8
Solyc12g042340.2 Solanum lycopersicum HOM05D002266 ORTHO05D010337 7.1e-45 185.7 380 32.9
Peaxi162Scf00135g01413 Petunia axillaris HOM05D002266 ORTHO05D010337 9.3e-45 185.3 379 33.5
FvH4_5g09640 Fragaria vesca HOM05D002266 ORTHO05D010337 2.1e-44 184.1 422 35.3
SGA_v2.0_scaffold74G24650 Striga asiatica HOM05D002266 ORTHO05D010337 6.0e-44 182.6 388 33.2
FAN04G1258 Fragaria x ananassa HOM05D002266 ORTHO05D010337 7.9e-44 182.2 421 34.0
Aqoxy3G02681 Aquilegia oxysepala HOM05D002266 ORTHO05D010337 2.3e-43 180.6 408 32.8
Oeu013660.2 Olea europaea HOM05D002266 ORTHO05D010337 2.5e-42 177.2 341 36.1
Sopen12g021270 Solanum pennellii HOM05D002266 ORTHO05D010337 3.3e-42 176.8 374 33.2
Cc04_g05840 Coffea canephora HOM05D002266 ORTHO05D010337 4.8e-41 172.9 397 32.7
FAN18G2616 Fragaria x ananassa HOM05D002266 ORTHO05D010337 1.4e-40 171.4 366 36.6
Lsat_1_v5_gn_5_10020 Lactuca sativa HOM05D002266 ORTHO05D010337 1.5e-39 167.9 389 32.1
SalBow1G8312 Salvia bowleyana HOM05D002266 ORTHO05D010337 7.6e-39 165.6 379 31.9
unitig_747.g21318 Utricularia gibba HOM05D002266 ORTHO05D010337 5.0e-38 162.9 369 32.8
FAN13G2170 Fragaria x ananassa HOM05D002266 ORTHO05D010337 4.6e-36 156.4 365 34.0
Dinv13716 Davidia involucrata HOM05D002266 ORTHO05D010337 3.9e-35 153.3 207 43.5
PSO339G3582 Papaver somniferum HOM05D002266 ORTHO05D010337 1.1e-34 151.8 397 30.0
Actinidia25516 Actinidia chinensis HOM05D002266 ORTHO05D010337 9.7e-34 148.7 307 32.2
MBI07_g35979_MAGBIO Magnolia biondii HOM05D002266 ORTHO05D010337 2.2e-33 147.5 298 35.6
FAN08G1259 Fragaria x ananassa HOM05D002266 ORTHO05D010337 1.9e-29 134.4 364 33.2
PGSC0003DMG400014448 Solanum tuberosum HOM05D002266 ORTHO05D010337 6.1e-28 129.4 314 29.9
SEGI_02612 Sequoiadendron giganteum HOM05D002266 ORTHO05D000002 5.5e-13 79.7 414 23.2
Cpa.g.sc13.177 Carica papaya HOM05D002266 ORTHO05D010337 7.7e-07 59.3 182 30.8


User provided reference genes

Program Settings