Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 3.4e-311 1070.8 548 100.0
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 2.1e-260 902.1 554 84.7
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 1.9e-253 879.0 560 82.1
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.6e-252 875.9 557 82.2
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 4.6e-252 874.4 553 81.7
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 1.3e-246 856.3 549 80.9
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.7e-246 855.9 554 80.5
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 7.2e-213 744.2 556 71.4
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 3.2e-205 718.8 568 66.2
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 1.1e-202 710.3 572 65.4
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 1.5e-202 709.9 564 66.5
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.0e-202 709.5 564 66.7
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 9.7e-202 707.2 550 65.5
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 4.8e-201 704.9 574 64.6
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 4.1e-200 701.8 568 65.1
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 7.0e-200 701.0 549 65.6
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 1.2e-199 700.3 562 65.8
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.6e-199 699.1 558 66.1
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 3.5e-199 698.7 504 70.2
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 5.9e-199 698.0 564 64.5
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 1.0e-198 697.2 506 70.4
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 1.7e-198 696.4 566 65.7
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 2.2e-198 696.0 564 64.7
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.2e-198 696.0 506 70.2
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.9e-198 695.7 564 65.6
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.1e-197 693.7 570 64.7
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 2.5e-197 692.6 563 64.5
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 2.5e-197 692.6 567 63.7
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 4.2e-197 691.8 563 65.9
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 7.2e-197 691.0 573 62.3
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 7.2e-197 691.0 566 64.1
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 7.2e-197 691.0 546 65.9
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 2.1e-196 689.5 565 63.7
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.7e-196 688.3 506 69.8
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 8.0e-196 687.6 574 63.9
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.0e-195 687.2 572 65.6
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 1.4e-195 686.8 561 64.2
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 6.8e-195 684.5 570 65.1
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 8.8e-195 684.1 490 69.8
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 8.8e-195 684.1 559 64.4
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 2.0e-194 682.9 568 62.9
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 2.6e-194 682.6 573 65.8
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 3.4e-194 682.2 573 64.9
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 4.4e-194 681.8 506 68.4
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 5.7e-194 681.4 556 65.6
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.8e-193 679.1 564 64.4
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 3.7e-193 678.7 569 64.3
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.8e-192 676.4 564 64.0
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 1.8e-192 676.4 571 62.0
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 3.1e-192 675.6 564 64.5
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.1e-192 675.2 564 64.4
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 4.1e-192 675.2 569 63.6
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 7.0e-192 674.5 560 62.9
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 1.2e-191 673.7 569 62.4
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 1.6e-191 673.3 565 63.2
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.0e-191 672.9 564 64.4
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 2.7e-191 672.5 570 63.0
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 3.5e-191 672.2 560 62.7
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.0e-190 670.6 506 68.8
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.3e-190 670.2 492 69.1
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 1.7e-190 669.8 562 62.1
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 2.2e-190 669.5 562 63.3
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.5e-189 666.8 506 67.6
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.5e-189 666.8 574 63.8
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 2.5e-189 666.0 506 66.6
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 2.5e-189 666.0 565 63.4
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 4.2e-189 665.2 561 62.0
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 9.4e-189 664.1 568 62.3
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 9.4e-189 664.1 570 64.0
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 2.7e-188 662.5 567 61.9
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 3.6e-188 662.1 564 61.2
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.0e-187 660.6 564 64.4
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.8e-187 659.8 563 63.2
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 1.2e-186 657.1 569 61.2
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.5e-186 656.8 506 66.8
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.5e-186 656.8 506 67.0
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 1.3e-185 653.7 558 62.5
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.8e-185 652.5 558 62.4
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 2.8e-185 652.5 502 67.1
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 3.7e-185 652.1 496 67.1
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.7e-185 652.1 503 67.2
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 1.4e-184 650.2 553 61.7
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 9.1e-184 647.5 490 66.3
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.6e-183 646.7 576 62.7
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 2.7e-183 646.0 557 62.5
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.5e-183 645.2 560 62.1
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 4.5e-183 645.2 544 64.2
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.3e-182 643.7 559 62.3
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 1.5e-181 640.2 575 60.3
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.5e-181 640.2 562 61.6
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 4.2e-181 638.6 493 65.9
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 8.0e-180 634.4 428 74.5
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.4e-179 633.6 575 60.3
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 2.2e-177 626.3 554 59.4
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 3.7e-177 625.5 572 58.9
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.9e-177 625.2 564 61.3
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 1.8e-176 623.2 569 58.7
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 5.4e-176 621.7 572 60.3
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 3.5e-175 619.0 513 62.4
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 7.8e-175 617.8 507 61.7
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 3.9e-174 615.5 537 62.8
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.1e-173 614.0 564 59.2
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 2.8e-172 609.4 540 62.4
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 8.9e-171 604.4 569 56.2
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.4e-170 602.4 562 58.0
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 7.5e-170 601.3 554 58.7
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 7.5e-170 601.3 562 58.9
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 1.3e-169 600.5 498 62.9
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 3.2e-168 595.9 563 58.3
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 6.0e-167 591.7 571 58.0
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.3e-166 589.7 545 58.9
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 1.1e-165 587.4 558 58.6
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 4.9e-161 572.0 420 68.3
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 1.1e-160 570.9 570 53.9
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 4.3e-157 558.9 501 58.5
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 3.0e-150 536.2 346 74.9
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 3.9e-150 535.8 445 60.2
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 1.4e-147 527.3 505 55.8
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 4.2e-144 515.8 384 66.1
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 2.5e-141 506.5 507 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 2.8e-132 476.5 502 50.2
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 6.4e-129 465.3 436 53.4
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 8.1e-124 448.4 397 58.7
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 4.9e-121 439.1 430 53.0
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.8e-116 423.3 512 43.6
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.6e-108 397.5 503 46.7
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 3.7e-108 396.4 258 72.9
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 1.7e-105 387.5 448 45.5
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 8.8e-94 348.6 460 46.1
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 9.7e-93 345.1 445 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 5.5e-88 329.3 300 53.0
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.0e-86 325.1 500 41.4
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.0e-86 325.1 288 62.2
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 6.7e-86 322.4 478 38.1
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 1.7e-81 307.8 244 68.0
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 7.0e-75 285.8 370 47.0
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 1.2e-71 275.0 444 36.0
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 9.2e-67 258.8 321 40.5
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 1.5e-48 198.4 231 51.5
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.3e-46 191.0 559 30.2
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 6.6e-33 146.4 147 57.8
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 6.2e-31 139.8 554 24.4
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 3.3e-16 90.9 92 59.8
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 1.6e-10 72.0 84 52.4


User provided reference genes

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