Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 4.6e-92 341.7 236 100.0
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 3.8e-46 189.1 237 51.1
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 5.0e-46 188.7 238 50.8
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 1.9e-45 186.8 238 50.4
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 7.2e-45 184.9 249 48.6
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 7.5e-42 174.9 253 46.6
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 4.9e-41 172.2 264 47.0
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 5.9e-39 165.2 243 46.1
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 4.3e-37 159.1 237 46.0
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.6e-36 157.1 247 53.4
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 2.1e-36 156.8 210 48.1
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 2.1e-36 156.8 210 48.1
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 4.7e-36 155.6 210 49.5
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 4.7e-36 155.6 210 49.5
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 4.7e-36 155.6 210 49.5
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 4.7e-36 155.6 234 46.6
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.8e-35 153.7 232 52.2
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 3.0e-35 152.9 234 44.0
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 5.2e-35 152.1 237 45.1
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 8.9e-35 151.4 237 53.6
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 9.8e-34 147.9 233 51.5
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 8.3e-33 144.8 249 51.8
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.8e-32 143.7 233 41.6
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 3.2e-32 142.9 211 45.0
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.0e-30 136.3 233 50.2
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 3.9e-30 136.0 238 40.8
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.1e-29 134.4 247 49.0
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 1.9e-29 133.7 240 49.2
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 1.9e-24 117.1 242 37.6
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 3.2e-24 116.3 108 60.2
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 3.2e-24 116.3 108 60.2
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 6.0e-23 112.1 242 36.4
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 1.0e-22 111.3 241 34.0
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 6.6e-22 108.6 239 34.3
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 1.9e-21 107.1 239 34.3
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 5.6e-21 105.5 240 35.0
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 2.1e-20 103.6 232 34.1
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 4.7e-20 102.4 238 34.9
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 4.7e-20 102.4 236 32.6
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.4e-19 100.9 200 35.5
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.4e-19 100.9 236 33.5
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 4.0e-19 99.4 241 35.3
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.2e-19 99.0 208 41.3
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 5.2e-19 99.0 245 31.8
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 6.8e-19 98.6 206 34.5
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 8.9e-19 98.2 200 34.5
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 8.9e-19 98.2 200 35.5
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 8.9e-19 98.2 195 34.4
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 1.2e-18 97.8 204 34.8
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 3.4e-18 96.3 221 32.1
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.4e-18 96.3 201 33.3
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 3.4e-18 96.3 200 47.5
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 3.4e-18 96.3 212 34.9
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 4.4e-18 95.9 238 33.6
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 4.4e-18 95.9 236 33.5
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 7.5e-18 95.1 203 33.5
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 7.5e-18 95.1 238 36.1
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.3e-17 94.4 190 33.7
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 1.7e-17 94.0 213 33.3
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 4.9e-17 92.4 196 34.7
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.1e-16 91.3 200 32.5
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.4e-16 90.1 196 31.6
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 3.2e-16 89.7 244 38.1
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 4.1e-16 89.4 243 30.5
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 4.1e-16 89.4 198 36.4
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.4e-16 89.0 207 45.4
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 5.4e-16 89.0 215 35.3
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 5.4e-16 89.0 209 31.1
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 5.4e-16 89.0 246 31.3
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 9.2e-16 88.2 197 31.0
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 9.2e-16 88.2 193 39.4
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 1.2e-15 87.8 247 32.0
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 1.2e-15 87.8 238 41.2
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 1.2e-15 87.8 238 34.9
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.1e-15 87.0 235 30.6
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 2.1e-15 87.0 235 30.6
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 6.0e-15 85.5 215 29.8
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 6.0e-15 85.5 197 34.0
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 6.0e-15 85.5 236 39.8
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 7.8e-15 85.1 235 30.2
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 1.0e-14 84.7 204 31.9
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 1.0e-14 84.7 216 30.1
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.0e-14 84.7 210 30.5
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.3e-14 84.3 240 32.1
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.7e-14 84.0 203 32.0
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.3e-14 83.6 210 28.1
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 3.0e-14 83.2 250 31.2
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 3.9e-14 82.8 212 33.0
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 8.6e-14 81.6 229 30.1
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 8.6e-14 81.6 209 31.6
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.1e-13 81.3 214 32.2
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.1e-13 81.3 206 29.6
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.5e-13 80.9 80 50.0
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 2.5e-13 80.1 111 43.2
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 4.3e-13 79.3 209 28.2
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 7.3e-13 78.6 114 43.9
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 7.3e-13 78.6 200 28.5
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 9.5e-13 78.2 200 33.0
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 1.2e-12 77.8 207 30.4
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 1.2e-12 77.8 209 29.2
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 2.8e-12 76.6 126 42.1
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 2.8e-12 76.6 240 28.8
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 3.6e-12 76.3 202 27.7
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 4.7e-12 75.9 97 45.4
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 8.1e-12 75.1 64 53.1
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.1e-11 74.7 199 28.1
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.4e-11 74.3 196 29.1
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.8e-11 73.9 206 29.1
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.3e-11 73.6 201 29.9
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.3e-11 73.6 207 29.0
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 3.1e-11 73.2 194 29.9
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.0e-11 72.8 91 44.0
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 5.2e-11 72.4 197 33.5
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 1.5e-10 70.9 72 51.4
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 4.4e-10 69.3 91 41.8
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 5.8e-10 68.9 68 52.9
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 1.7e-09 67.4 88 48.9
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 2.2e-09 67.0 84 41.7
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 3.7e-09 66.2 75 49.3
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 3.7e-09 66.2 194 27.8
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 4.9e-09 65.9 73 49.3
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 1.1e-08 64.7 77 45.5
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 3.2e-08 63.2 164 39.6
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 5.4e-08 62.4 180 27.2
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 1.6e-07 60.8 77 44.2
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 1.6e-07 60.8 28 96.4
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 2.1e-07 60.5 212 27.4
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 2.7e-07 60.1 146 46.6
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 2.7e-07 60.1 146 46.6
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 4.6e-07 59.3 187 26.2
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 1.7e-06 57.4 74 45.9
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 5.1e-06 55.8 52 44.2
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 5.1e-06 55.8 59 45.8


User provided reference genes

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