Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G14680 Aethionema arabicum HOM05D007570 ORTHO05D009365 2.9e-63 245.0 117 100.0
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 6.6e-39 164.1 115 72.2
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 8.6e-39 163.7 116 70.7
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 4.7e-37 157.9 116 67.2
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 8.9e-36 153.7 115 67.0
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 3.4e-35 151.8 116 68.1
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 2.8e-34 148.7 116 67.2
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 2.1e-29 132.5 113 60.2
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 4.4e-27 124.8 113 60.2
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 2.9e-26 122.1 113 59.3
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 3.7e-26 121.7 114 58.8
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 6.4e-26 120.9 112 58.9
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 8.3e-26 120.6 114 57.9
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 6.4e-10 67.8 64 51.6
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 6.4e-10 67.8 64 51.6
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 8.3e-10 67.4 67 44.8
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 2.4e-09 65.9 121 38.0
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 2.4e-09 65.9 64 50.0
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 1.6e-08 63.2 62 50.0
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 1.6e-08 63.2 62 50.0
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 1.6e-08 63.2 114 37.7
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 2.1e-08 62.8 67 47.8
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 2.7e-08 62.4 101 38.6
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 3.5e-08 62.0 125 34.4
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 3.5e-08 62.0 62 51.6
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 4.6e-08 61.6 60 45.0
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 4.6e-08 61.6 60 45.0
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 4.6e-08 61.6 62 46.8
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 7.8e-08 60.8 64 46.9
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 1.3e-07 60.1 57 50.9
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 1.3e-07 60.1 56 48.2
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 1.3e-07 60.1 101 42.6
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 1.7e-07 59.7 56 51.8
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.7e-07 59.7 56 48.2
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 2.3e-07 59.3 63 46.0
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 3.0e-07 58.9 63 44.4
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 3.9e-07 58.5 79 35.4
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 5.1e-07 58.2 62 48.4
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 5.1e-07 58.2 101 41.6
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 6.6e-07 57.8 63 42.9
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 6.6e-07 57.8 61 42.6
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 8.6e-07 57.4 92 38.0
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 1.1e-06 57.0 57 47.4
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 1.5e-06 56.6 57 50.9
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.5e-06 56.6 56 46.4
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 1.5e-06 56.6 62 48.4
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 1.9e-06 56.2 109 35.8
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 1.9e-06 56.2 57 50.9
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 1.9e-06 56.2 57 45.6
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 2.5e-06 55.8 57 42.1
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 2.5e-06 55.8 57 42.1
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 3.3e-06 55.5 63 44.4
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 4.3e-06 55.1 57 47.4
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 9.5e-06 53.9 58 41.4


User provided reference genes

Program Settings