Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 2.0e-89 332.4 165 100.0
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 2.3e-66 255.8 162 75.3
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 2.3e-66 255.8 163 76.7
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 2.0e-65 252.7 163 74.8
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 2.6e-65 252.3 148 80.4
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 7.5e-65 250.8 163 75.5
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 9.8e-65 250.4 163 75.5
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 1.3e-64 250.0 163 75.5
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 2.2e-64 249.2 163 74.8
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 3.7e-64 248.4 146 80.1
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 6.4e-64 247.7 158 75.3
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 9.2e-63 243.8 146 78.1
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 1.6e-62 243.0 155 73.5
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 2.0e-62 242.7 155 72.9
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 1.7e-61 239.6 155 71.6
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 2.3e-61 239.2 146 77.4
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 3.9e-61 238.4 155 71.6
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 3.9e-61 238.4 155 71.6
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 2.5e-60 235.7 155 70.3
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 8.9e-58 227.3 160 68.8
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 5.8e-57 224.6 160 68.1
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 9.8e-57 223.8 163 70.6
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 9.8e-57 223.8 160 67.5
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 3.7e-56 221.9 156 67.3
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 4.9e-56 221.5 160 66.9
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 8.3e-56 220.7 150 70.0
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 1.1e-55 220.3 155 68.4
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 1.4e-55 219.9 160 66.2
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 2.4e-55 219.2 150 70.0
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 2.4e-55 219.2 148 69.6
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 3.2e-55 218.8 162 66.0
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 5.4e-55 218.0 160 65.0
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 5.4e-55 218.0 163 63.2
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 7.0e-55 217.6 150 69.3
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 1.2e-54 216.9 162 64.8
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 1.2e-54 216.9 148 70.3
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 2.0e-54 216.1 150 68.0
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 2.7e-54 215.7 144 70.1
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 3.5e-54 215.3 150 69.3
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 3.5e-54 215.3 146 69.2
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 3.5e-54 215.3 150 66.7
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 4.6e-54 214.9 157 66.9
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 6.0e-54 214.5 148 68.2
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 6.0e-54 214.5 146 71.2
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 6.0e-54 214.5 165 65.5
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 6.0e-54 214.5 163 63.8
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 7.8e-54 214.2 160 65.6
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 1.3e-53 213.4 153 65.4
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 1.3e-53 213.4 150 68.7
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.3e-53 213.4 146 68.5
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 1.7e-53 213.0 150 69.3
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 1.7e-53 213.0 160 63.8
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 1.7e-53 213.0 160 63.8
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.7e-53 213.0 161 60.9
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.7e-53 213.0 161 62.1
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 2.3e-53 212.6 146 67.8
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 2.3e-53 212.6 159 62.3
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 2.3e-53 212.6 150 69.3
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 2.3e-53 212.6 150 67.3
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 3.0e-53 212.2 154 66.9
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 3.0e-53 212.2 148 66.9
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 3.0e-53 212.2 144 68.1
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 3.9e-53 211.8 163 65.6
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 3.9e-53 211.8 158 62.7
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 3.9e-53 211.8 144 68.1
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 5.0e-53 211.5 156 64.1
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 5.0e-53 211.5 154 65.6
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 8.6e-53 210.7 156 66.7
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 8.6e-53 210.7 160 63.8
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 1.1e-52 210.3 158 63.3
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 1.1e-52 210.3 150 67.3
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 1.1e-52 210.3 144 68.8
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 1.5e-52 209.9 163 62.6
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.5e-52 209.9 160 63.1
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.5e-52 209.9 160 63.1
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.9e-52 209.5 150 66.0
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 1.9e-52 209.5 150 65.3
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 2.5e-52 209.1 143 68.5
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 4.3e-52 208.4 148 66.9
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 7.3e-52 207.6 160 63.8
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 9.5e-52 207.2 161 62.7
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 9.5e-52 207.2 154 64.9
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 1.2e-51 206.8 159 64.2
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 1.2e-51 206.8 144 66.7
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 1.6e-51 206.5 142 66.2
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 2.1e-51 206.1 150 63.3
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 3.6e-51 205.3 148 66.2
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 8.1e-51 204.1 148 66.9
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 8.1e-51 204.1 160 60.0
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 8.1e-51 204.1 158 62.7
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 8.1e-51 204.1 146 65.1
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.1e-50 203.8 148 66.2
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 1.8e-50 203.0 146 64.4
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 1.8e-50 203.0 154 61.0
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 4.0e-50 201.8 154 65.6
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 2.6e-49 199.1 148 64.2
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.3e-48 196.8 140 67.9
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 1.3e-48 196.8 150 62.7
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 3.7e-48 195.3 150 62.7
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 1.1e-47 193.7 149 61.7
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 3.2e-47 192.2 150 62.0
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 9.2e-47 190.7 149 61.7
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.6e-46 189.9 150 61.3
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 2.1e-46 189.5 150 61.3
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 4.6e-46 188.3 148 62.2
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.3e-45 186.8 125 72.0
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 1.5e-44 183.3 144 59.7
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 4.3e-44 181.8 159 54.7
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 5.6e-44 181.4 151 58.3
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 3.6e-43 178.7 142 56.3
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 3.6e-43 178.7 149 55.0
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 1.1e-42 177.2 119 69.7
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 3.4e-41 172.2 145 56.6
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 2.2e-40 169.5 134 62.7
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 6.0e-38 161.4 149 46.3
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.7e-37 159.8 148 50.7
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 3.6e-35 152.1 147 47.6
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 5.2e-34 148.3 119 60.5
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 6.9e-34 147.9 131 52.7
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 8.9e-34 147.5 145 48.3
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 1.7e-32 143.3 144 49.3
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 2.2e-32 142.9 119 61.3
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 8.4e-32 141.0 99 66.7
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 3.5e-30 135.6 143 48.3
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.0e-29 134.0 97 62.9
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 1.7e-29 133.3 133 54.1
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 8.7e-29 131.0 146 45.2
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 9.6e-28 127.5 108 57.4
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 4.0e-26 122.1 141 44.0
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 9.3e-23 110.9 153 39.2
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 1.3e-21 107.1 85 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 7.4e-20 101.3 84 53.6
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 1.1e-18 97.4 149 38.3
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 1.2e-17 94.0 74 59.5


User provided reference genes

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