Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G130 Aethionema arabicum HOM05D006397 ORTHO05D008678 1.8e-38 162.2 83 100.0
AL8G34520 Arabidopsis lyrata HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
BcaB08g36174 Brassica carinata HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
BcaC04g19873 Brassica carinata HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
A10p15890 Brassica napus HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
C09p50240 Brassica napus HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
BolC9t57881H Brassica oleracea HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
BraA10t43636Z Brassica rapa HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
Carub.0008s1895 Capsella rubella HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
CARHR272200 Cardamine hirsuta HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
Thhalv10013426m.g Eutrema salsugineum HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
Sp6g20030 Schrenkiella parvula HOM05D006397 ORTHO05D008678 1.7e-09 65.9 53 69.8
Aa31LG11G160 Aethionema arabicum HOM05D006397 ORTHO05D008678 2.2e-09 65.5 53 69.8
Glyma.11G160900 Glycine max HOM05D006397 ORTHO05D008678 2.9e-09 65.1 53 67.9
TPR.G24965 Trifolium pratense HOM05D006397 ORTHO05D008678 2.9e-09 65.1 54 66.7
AT5G58370 Arabidopsis thaliana HOM05D006397 ORTHO05D008678 5.0e-09 64.3 53 67.9
VMungo0540G2004 Vigna mungo HOM05D006397 ORTHO05D008678 5.0e-09 64.3 54 66.7
Carub.0001s4471 Capsella rubella HOM05D006397 ORTHO05D008678 6.5e-09 63.9 53 67.9
Lj6g0007072 Lotus japonicus HOM05D006397 ORTHO05D008678 6.5e-09 63.9 54 66.7
Glyma.18G054700 Glycine max HOM05D006397 ORTHO05D008678 8.5e-09 63.5 53 66.0
Lalb_Chr15g0085941 Lupinus albus HOM05D006397 ORTHO05D008678 8.5e-09 63.5 54 66.7
Medtr3g466440 Medicago truncatula HOM05D006397 ORTHO05D008678 8.5e-09 63.5 54 64.8
Psat5g150360 Pisum sativum HOM05D006397 ORTHO05D008678 1.9e-08 62.4 54 64.8
Atru.chr1.2536 Acer truncatum HOM05D006397 ORTHO05D008678 2.5e-08 62.0 53 66.0
Ah.03g136270 Amaranthus hybridus HOM05D006397 ORTHO05D008678 2.5e-08 62.0 53 64.2
Eucgr.F00631 Eucalyptus grandis HOM05D006397 ORTHO05D008678 2.5e-08 62.0 55 63.6
Nn2g10355 Nelumbo nucifera HOM05D006397 ORTHO05D008678 2.5e-08 62.0 53 66.0
Phvul.006G076500 Phaseolus vulgaris HOM05D006397 ORTHO05D008678 2.5e-08 62.0 54 64.8
QL01p025213 Quercus lobata HOM05D006397 ORTHO05D008678 2.5e-08 62.0 53 66.0
ClCG06G014230 Citrullus lanatus HOM05D006397 ORTHO05D008678 3.2e-08 61.6 53 66.0
MELO3C017369.2 Cucumis melo HOM05D006397 ORTHO05D008678 3.2e-08 61.6 53 66.0
SGA_v2.0_scaffold54G19466 Striga asiatica HOM05D006397 ORTHO05D008678 3.2e-08 61.6 59 59.3
Ciclev10000863m.g Citrus clementina HOM05D006397 ORTHO05D008678 4.2e-08 61.2 53 64.2
CsaV3_1G004450 Cucumis sativus L. HOM05D006397 ORTHO05D008678 4.2e-08 61.2 53 66.0
EL10Ac6g13475 Beta vulgaris HOM05D006397 ORTHO05D008678 5.5e-08 60.8 53 64.2
CiPaw.13G065600 Carya illinoinensis HOM05D006397 ORTHO05D008678 5.5e-08 60.8 53 62.3
Lj1A122G62 Lonicera japonica HOM05D006397 ORTHO05D008678 5.5e-08 60.8 53 60.4
THA.LOC104810688 Tarenaya hassleriana HOM05D006397 ORTHO05D008678 5.5e-08 60.8 53 66.0
Ca_15031_v3 Cicer arietinum L. HOM05D006397 ORTHO05D008678 7.2e-08 60.5 54 61.1
Dinv12266 Davidia involucrata HOM05D006397 ORTHO05D008678 7.2e-08 60.5 53 64.2
Peaxi162Scf01078g00513 Petunia axillaris HOM05D006397 ORTHO05D008678 7.2e-08 60.5 55 61.8
Rhsim01G0242300 Rhododendron simsii HOM05D006397 ORTHO05D008678 7.2e-08 60.5 53 64.2
Sed0005219 Sechium edule HOM05D006397 ORTHO05D008678 7.2e-08 60.5 51 62.7
TAR633G1718 Trochodendron aralioides HOM05D006397 ORTHO05D008678 7.2e-08 60.5 53 64.2
vmacro14634 Vaccinium macrocarpon HOM05D006397 ORTHO05D008678 7.2e-08 60.5 53 64.2
CSS0041035 Camellia sinensis var. sinensis HOM05D006397 ORTHO05D008678 9.4e-08 60.1 53 64.2
Haze_24449 Corylus avellana HOM05D006397 ORTHO05D008678 9.4e-08 60.1 53 64.2
Oeu042526.1 Olea europaea HOM05D006397 ORTHO05D008678 9.4e-08 60.1 53 64.2
PGR102G0855 Punica granatum HOM05D006397 ORTHO05D008678 9.4e-08 60.1 53 64.2
Thecc.09G361800 Theobroma cacao HOM05D006397 ORTHO05D008678 9.4e-08 60.1 53 64.2
CANSAT54G1480 Cannabis sativa HOM05D006397 ORTHO05D008678 1.2e-07 59.7 53 62.3
DCAR_009221 Daucus carota HOM05D006397 ORTHO05D008678 1.2e-07 59.7 53 62.3
Gohir.A03G023600 Gossypium hirsutum HOM05D006397 ORTHO05D008678 1.2e-07 59.7 53 64.2
Gohir.D03G145000 Gossypium hirsutum HOM05D006397 ORTHO05D008678 1.2e-07 59.7 53 64.2
Gorai.003G152200 Gossypium raimondii HOM05D006397 ORTHO05D008678 1.2e-07 59.7 53 64.2
AUR62024131 Chenopodium quinoa HOM05D006397 ORTHO05D008678 1.6e-07 59.3 53 62.3
Dinv28718 Davidia involucrata HOM05D006397 ORTHO05D008678 1.6e-07 59.3 53 62.3
Hma1.2p1_2270F.1_g318490 Hydrangea macrophylla HOM05D006397 ORTHO05D008678 2.1e-07 58.9 53 62.3
SHI12305 Sapria himalayana HOM05D006397 ORTHO05D008678 2.1e-07 58.9 60 58.3
Hund25453 Selenicereus undatus HOM05D006397 ORTHO05D008678 2.1e-07 58.9 53 62.3
Cpa.g.sc2.323 Carica papaya HOM05D006397 ORTHO05D008678 2.7e-07 58.5 53 62.3
Cc01_g15170 Coffea canephora HOM05D006397 ORTHO05D008678 2.7e-07 58.5 53 62.3
Nitab4.5_0000002g0150 Nicotiana tabacum HOM05D006397 ORTHO05D008678 2.7e-07 58.5 53 60.4
PSO339G5103 Papaver somniferum HOM05D006397 ORTHO05D008678 2.7e-07 58.5 53 62.3
PSO384G0202 Papaver somniferum HOM05D006397 ORTHO05D008678 2.7e-07 58.5 53 62.3
Sabra19G0125700 Salix brachista HOM05D006397 ORTHO05D008678 2.7e-07 58.5 53 60.4
Actinidia23846 Actinidia chinensis HOM05D006397 ORTHO05D008678 3.6e-07 58.2 53 62.3
Aqoxy2G00726 Aquilegia oxysepala HOM05D006397 ORTHO05D008678 3.6e-07 58.2 53 60.4
COL.COLO4_11191 Corchorus olitorius HOM05D006397 ORTHO05D008678 3.6e-07 58.2 53 62.3
Nitab4.5_0001234g0030 Nicotiana tabacum HOM05D006397 ORTHO05D008678 3.6e-07 58.2 53 60.4
SEGI_16401 Sequoiadendron giganteum HOM05D006397 ORTHO05D008678 3.6e-07 58.2 53 62.3
arahy.Tifrunner.gnm1.ann1.KH4X6I Arachis hypogaea HOM05D006397 ORTHO05D008678 4.7e-07 57.8 54 61.1
arahy.Tifrunner.gnm1.ann1.NSG1B1 Arachis hypogaea HOM05D006397 ORTHO05D008678 4.7e-07 57.8 54 61.1
FvH4_3g40250 Fragaria vesca HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
FAN11G0084 Fragaria x ananassa HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
FAN16G1173 Fragaria x ananassa HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
FAN21G2253 Fragaria x ananassa HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
FAN25G0326 Fragaria x ananassa HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
MD03G1054800 Malus domestica HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
Potri.019G128000 Populus trichocarpa HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
Prupe.6G043400 Prunus persica HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
RcHm_v2.0_Chr5g0072471 Rosa chinensis HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
RcHm_v2.0_Chr5g0073721 Rosa chinensis HOM05D006397 ORTHO05D008678 4.7e-07 57.8 53 60.4
Migut.D00830 Erythranthe guttata HOM05D006397 ORTHO05D008678 6.1e-07 57.4 70 54.3
HanXRQChr01g0013321 Helianthus annuus HOM05D006397 ORTHO05D008678 6.1e-07 57.4 70 52.9
ATR0681G072 Amborella trichopoda HOM05D006397 ORTHO05D008678 8.0e-07 57.0 60 50.0
Manes.18G137700 Manihot esculenta HOM05D006397 ORTHO05D008678 8.0e-07 57.0 53 62.3
Sc11g0000530 Simmondsia chinensis HOM05D006397 ORTHO05D008678 1.0e-06 56.6 53 60.4
MSTRG.21252 Avicennia marina HOM05D006397 ORTHO05D008678 1.4e-06 56.2 70 52.9
CAN.G583.1 Capsicum annuum HOM05D006397 ORTHO05D000105 1.4e-06 56.2 55 58.2
Cfa011809 Carpinus fangiana HOM05D006397 ORTHO05D008678 1.4e-06 56.2 53 60.4
CDE04G2202 Ceratophyllum demersum HOM05D006397 ORTHO05D008678 1.4e-06 56.2 53 58.5
HPP92_013778 Vanilla planifolia HOM05D006397 ORTHO05D008678 1.4e-06 56.2 53 58.5
Sopen06g002120 Solanum pennellii HOM05D006397 ORTHO05D008678 1.8e-06 55.8 53 58.5
unitig_62.g23948 Utricularia gibba HOM05D006397 ORTHO05D008678 1.8e-06 55.8 70 52.9
PGSC0003DMG400004167 Solanum tuberosum HOM05D006397 ORTHO05D008678 2.3e-06 55.5 53 58.5
ECA248G2369 Erigeron canadensis HOM05D000055 ORTHO05D000057 4.0e-06 54.7 70 51.4
Lsat_1_v5_gn_5_175180 Lactuca sativa HOM05D006397 ORTHO05D008678 5.2e-06 54.3 56 55.4


User provided reference genes

Program Settings