Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 6.2e-121 437.6 237 100.0
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 1.7e-73 280.0 246 67.9
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 1.6e-71 273.5 243 67.9
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 1.6e-71 273.5 239 66.9
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 3.5e-71 272.3 242 67.4
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 4.5e-71 271.9 239 68.2
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 2.9e-70 269.2 242 66.5
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 1.5e-69 266.9 233 67.0
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 1.5e-69 266.9 245 66.5
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 1.5e-69 266.9 245 66.5
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 9.4e-69 264.2 213 72.3
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 8.8e-67 257.7 214 71.5
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 4.4e-66 255.4 198 75.3
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 9.7e-66 254.2 253 62.5
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 2.9e-62 242.7 247 62.8
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 3.3e-53 212.6 229 57.6
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.4e-51 207.2 213 58.2
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 3.0e-51 206.1 200 59.5
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 3.0e-51 206.1 243 53.9
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.5e-50 203.8 243 52.7
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.5e-50 203.8 243 52.7
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.0e-50 203.4 243 53.5
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.0e-50 203.4 243 53.1
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.0e-50 203.4 243 53.1
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 7.5e-50 201.4 226 54.0
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 2.8e-49 199.5 225 55.1
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 4.9e-49 198.7 233 54.1
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 4.9e-49 198.7 227 55.9
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 6.3e-49 198.4 211 58.3
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 8.3e-49 198.0 197 60.4
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 8.3e-49 198.0 223 52.9
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 1.4e-48 197.2 225 54.2
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 1.4e-48 197.2 189 61.4
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 1.8e-48 196.8 188 59.6
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 2.4e-48 196.4 230 53.5
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 5.4e-48 195.3 224 52.7
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.2e-47 194.1 209 54.5
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 2.7e-47 193.0 229 51.5
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 7.8e-47 191.4 192 59.9
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 1.7e-46 190.3 232 53.0
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 6.6e-46 188.3 204 54.9
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 8.6e-46 188.0 198 56.6
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 1.1e-45 187.6 220 51.8
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 1.1e-45 187.6 250 48.8
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 1.9e-45 186.8 218 55.0
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 1.9e-45 186.8 204 54.9
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 7.3e-45 184.9 220 53.6
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 9.5e-45 184.5 228 52.2
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.6e-44 183.7 208 53.8
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 2.8e-44 183.0 201 55.2
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 2.8e-44 183.0 221 52.9
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 3.6e-44 182.6 207 55.1
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 1.0e-43 181.0 202 56.4
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 1.4e-43 180.6 196 55.1
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 1.4e-43 180.6 231 52.4
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 3.1e-43 179.5 234 50.9
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 6.8e-43 178.3 256 50.0
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 1.2e-42 177.6 239 50.2
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 1.5e-42 177.2 190 57.9
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 5.8e-42 175.3 247 47.8
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 7.5e-42 174.9 198 56.1
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 7.5e-42 174.9 183 60.1
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 9.8e-42 174.5 191 55.5
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 2.9e-41 172.9 207 52.7
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 4.9e-41 172.2 230 48.7
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 1.1e-40 171.0 244 46.7
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 1.4e-40 170.6 226 50.9
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 2.4e-40 169.9 225 49.3
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 2.4e-40 169.9 229 48.9
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 2.4e-40 169.9 226 45.6
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 3.2e-40 169.5 228 50.9
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 7.0e-40 168.3 191 55.0
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 1.2e-39 167.5 192 53.1
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 2.7e-39 166.4 197 51.8
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 7.8e-39 164.9 251 45.8
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 7.8e-39 164.9 168 58.9
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 7.8e-39 164.9 209 49.8
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 3.9e-38 162.5 286 39.5
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 8.6e-38 161.4 173 54.9
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 1.1e-37 161.0 223 47.5
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 1.9e-37 160.2 231 46.3
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 1.6e-36 157.1 206 49.0
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 3.6e-36 156.0 122 64.8
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 8.0e-36 154.8 266 44.0
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 1.1e-35 154.5 195 50.3
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 3.1e-35 152.9 261 43.7
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 3.1e-35 152.9 195 49.7
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 1.5e-34 150.6 110 68.2
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 2.6e-34 149.8 220 48.2
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 3.4e-34 149.4 174 55.2
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 1.4e-32 144.1 104 68.3
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 4.1e-32 142.5 276 41.3
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 7.8e-31 138.3 197 46.2
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 8.6e-30 134.8 130 58.5
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 8.6e-30 134.8 172 50.0
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 1.5e-29 134.0 106 64.2
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 5.6e-29 132.1 271 38.7
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 2.3e-27 126.7 206 43.2
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 4.0e-27 125.9 239 41.0
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 3.4e-26 122.9 192 44.8
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 1.0e-22 111.3 190 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 1.4e-19 100.9 119 46.2
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 1.4e-19 100.9 150 42.0
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 1.2e-18 97.8 104 64.4
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 2.0e-18 97.1 126 43.7
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 5.8e-18 95.5 103 51.5
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 4.9e-17 92.4 108 58.3
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 2.4e-16 90.1 108 57.4
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 7.8e-15 85.1 172 42.4
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 1.7e-14 84.0 153 47.1
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 3.9e-14 82.8 50 76.0
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 2.8e-12 76.6 76 50.0
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 3.6e-12 76.3 118 42.4
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 6.2e-12 75.5 216 32.4
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 3.1e-11 73.2 51 68.6
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 3.8e-09 66.2 44 79.5
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 2.3e-06 57.0 161 28.6


User provided reference genes

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