Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 2329.3 1187 100.0
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2177.5 1286 87.6
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2175.6 1286 87.2
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2175.2 1286 87.3
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2173.3 1287 87.3
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2167.1 1290 87.0
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2163.3 1295 86.5
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2155.2 1298 86.2
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2131.7 1289 86.1
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2120.9 1286 85.4
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2109.0 1293 85.0
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2103.2 1296 84.7
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2073.5 1296 83.8
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 1999.9 1287 79.5
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1996.9 1287 79.3
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1996.1 1287 79.6
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 1983.0 1288 79.3
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 1978.4 1287 79.2
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 1969.5 1288 78.7
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 1968.4 1287 78.2
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1965.7 1288 78.4
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 1963.7 1287 77.9
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 1959.5 1288 78.2
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 1958.0 1286 78.1
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1954.5 1300 77.6
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 1953.7 1289 77.7
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1948.7 1300 77.3
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 1947.2 1258 79.2
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 1944.1 1287 77.9
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1942.2 1287 77.7
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 1940.2 1286 77.4
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 1939.5 1291 77.4
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 1939.5 1302 76.5
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 1938.3 1287 77.2
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1937.2 1286 77.1
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1936.8 1286 77.2
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1933.3 1285 77.0
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 1932.1 1286 77.1
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 1931.8 1291 77.1
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1930.6 1320 75.5
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 1929.8 1284 76.9
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 1929.5 1288 76.9
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1928.3 1289 77.0
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 1925.6 1285 76.7
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 1925.6 1286 77.1
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1923.3 1299 76.3
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1921.7 1292 76.7
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1920.6 1286 76.7
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 1909.0 1271 76.6
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 1900.2 1286 76.0
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 1898.6 1295 76.8
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 1890.9 1300 74.6
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1890.9 1287 75.4
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 1884.4 1301 74.8
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 1883.6 1288 74.9
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 1882.8 1289 74.9
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 1882.5 1280 75.5
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 1880.5 1284 75.2
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 1879.0 1310 74.7
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1870.9 1291 75.2
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1863.2 1288 74.0
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1862.0 1287 74.4
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 1856.3 1288 73.7
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1855.5 1282 74.3
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 1852.0 1289 73.5
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1849.3 1287 74.0
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1844.7 1262 75.3
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1841.2 1288 73.5
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1815.8 1288 73.4
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 1808.5 1308 73.2
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1785.0 1532 64.0
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1764.2 1215 74.2
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1763.8 1389 67.9
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1733.0 1221 72.6
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1718.7 1293 68.1
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1692.9 1291 67.1
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1664.4 1174 72.7
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1570.8 1311 65.0
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1545.8 963 82.2
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1543.5 954 82.5
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1464.5 1072 72.0
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1427.2 1149 65.0
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1408.3 935 75.8
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1401.0 1267 57.5
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1394.0 1263 57.8
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1372.8 1207 60.0
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1354.3 1331 53.4
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1344.3 939 72.3
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1335.9 909 74.0
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1333.9 907 74.4
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1303.1 1290 53.3
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1297.0 912 72.0
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1295.4 913 71.9
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1249.6 835 75.7
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1241.5 1279 51.4
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1224.2 909 68.8
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1167.5 952 64.5
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1152.5 919 63.5
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.7e-299 1033.1 690 77.0
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 1.7e-235 820.5 803 56.5
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 3.2e-218 763.1 474 83.1
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.0e-208 731.5 823 50.1
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 1.9e-194 684.1 502 73.1
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 1.9e-186 657.5 439 79.3
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 5.6e-186 656.0 542 63.8
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 3.1e-160 570.5 341 87.7
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 1.7e-155 554.7 321 89.7
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.3e-153 548.5 321 89.1
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 4.8e-153 546.6 321 88.2
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.4e-152 545.0 423 66.2
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 1.4e-149 535.0 321 86.3
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 6.0e-148 529.6 376 69.7
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 2.0e-143 514.6 321 84.4
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 9.3e-141 505.8 637 43.5
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 3.0e-139 500.7 321 82.2
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.2e-129 468.0 449 55.5
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.7e-126 458.4 364 69.8
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 8.8e-123 446.0 248 91.9
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 3.1e-120 437.6 336 65.8
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 1.3e-110 405.6 227 91.2
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 1.0e-107 396.0 333 61.6
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 9.7e-106 389.4 243 80.2
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 7.2e-101 373.2 267 76.0
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 8.8e-99 366.3 248 79.8
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 8.8e-99 366.3 263 74.1
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 4.4e-98 364.0 321 61.7
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 9.1e-96 356.3 299 61.2
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 2.3e-75 288.5 408 43.6
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.1e-69 269.6 154 89.0
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 7.3e-69 266.9 166 78.9
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 8.6e-62 243.4 134 91.0
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.7e-54 219.2 130 86.9
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 4.3e-53 214.5 264 45.1
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 1.8e-51 209.1 142 71.8
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 1.1e-48 199.9 320 33.4
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 3.0e-46 191.8 119 77.3
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 3.9e-46 191.4 130 70.0
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 6.9e-43 180.6 123 78.9
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 7.8e-39 167.2 164 57.3
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 6.6e-38 164.1 127 65.4
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 9.6e-37 160.2 123 70.7
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.1e-36 159.1 98 77.6
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.1e-35 156.8 113 67.3
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.4e-35 156.4 98 76.5
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.9e-33 148.7 128 64.1
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.6e-26 125.6 95 62.1
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 7.6e-26 124.0 85 68.2
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 7.6e-26 124.0 64 90.6
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 1.3e-25 123.2 63 92.1
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.5e-25 120.9 64 85.9
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 6.5e-25 120.9 64 84.4
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 3.5e-23 115.2 73 75.3
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 7.9e-23 114.0 112 56.2
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.9e-21 109.4 63 76.2
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 9.3e-16 90.5 104 51.0
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 5.7e-13 81.3 54 72.2
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 1.3e-09 70.1 77 51.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 1.9e-08 66.2 142 34.5
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 7.9e-07 60.8 32 81.2


User provided reference genes

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