Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 2.2e-192 675.6 337 100.0
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 3.5e-174 615.1 337 91.4
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 4.5e-174 614.8 339 91.4
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.2e-173 612.5 339 91.2
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 1.9e-172 609.4 339 90.9
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.6e-171 606.3 337 89.9
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 2.1e-171 605.9 337 90.2
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.6e-171 605.1 337 89.9
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-170 602.8 337 89.6
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.2e-169 600.1 337 89.3
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 4.4e-169 598.2 337 89.0
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 9.8e-169 597.0 337 89.0
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.2e-166 590.1 338 88.5
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.7e-166 589.0 338 88.2
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 4.5e-166 588.2 338 88.2
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.7e-165 586.3 339 88.2
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 1.1e-164 583.6 329 89.4
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.5e-164 583.2 339 87.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.2e-161 573.5 338 84.9
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.7e-160 569.7 346 84.1
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 2.0e-158 562.8 320 89.1
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 4.3e-156 555.1 339 82.3
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 4.3e-156 555.1 337 81.3
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.1e-155 552.7 337 81.6
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.2e-152 542.7 337 81.0
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.2e-152 542.7 337 79.8
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.9e-151 539.7 337 78.9
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 4.1e-151 538.5 343 79.3
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.9e-149 531.9 310 84.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.1e-148 530.4 337 77.7
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.5e-148 530.0 337 78.3
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.5e-148 530.0 335 77.6
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.9e-148 529.6 351 77.5
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.9e-148 529.6 336 77.7
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.5e-148 529.3 337 77.4
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 4.3e-148 528.5 337 77.2
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 5.6e-148 528.1 337 78.9
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 5.6e-148 528.1 335 77.9
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 9.5e-148 527.3 335 77.3
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 9.5e-148 527.3 335 77.9
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 9.5e-148 527.3 337 78.3
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.2e-147 526.9 337 78.3
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.8e-147 525.8 337 78.3
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 4.7e-147 525.0 335 77.0
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.7e-147 525.0 337 77.4
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 8.1e-147 524.2 335 79.7
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.4e-146 523.5 339 76.4
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.1e-146 522.3 337 78.3
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 4.0e-146 521.9 339 76.4
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 5.2e-146 521.5 340 77.9
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.8e-146 521.2 337 75.7
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 6.8e-146 521.2 337 78.3
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 6.8e-146 521.2 337 77.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.2e-145 520.4 338 77.8
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-145 520.4 337 77.2
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 6.4e-144 514.6 330 79.1
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.4e-143 513.5 337 75.7
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 4.1e-143 511.9 334 77.5
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.5e-142 508.8 338 75.7
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.0e-141 505.8 377 68.2
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 3.0e-141 505.8 337 76.6
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 3.0e-141 505.8 338 74.9
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 6.6e-141 504.6 313 78.9
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 6.6e-141 504.6 338 75.1
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 8.6e-141 504.2 336 75.3
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.1e-140 503.8 337 76.0
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.5e-140 503.4 338 75.4
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 2.5e-140 502.7 414 64.3
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 4.3e-140 501.9 338 74.9
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.3e-140 501.9 343 74.9
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 5.6e-140 501.5 339 76.4
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.2e-139 500.4 338 75.1
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.2e-139 500.4 337 75.7
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.6e-139 500.0 337 73.0
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.6e-139 500.0 309 81.6
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 3.6e-139 498.8 337 75.1
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.1e-138 495.7 319 76.5
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 2.6e-137 492.7 345 73.0
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.4e-137 492.3 344 72.7
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 4.4e-137 491.9 344 72.7
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 5.8e-137 491.5 337 73.9
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.7e-136 490.0 338 73.7
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.2e-136 489.6 337 74.8
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 2.9e-136 489.2 340 72.9
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 6.4e-136 488.0 319 75.5
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 8.4e-136 487.6 338 73.4
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.4e-135 486.9 340 73.2
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 2.4e-135 486.1 336 73.8
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 3.2e-135 485.7 340 73.8
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 3.5e-134 482.3 317 76.3
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 6.0e-134 481.5 326 74.5
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 3.0e-133 479.2 302 78.5
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.9e-133 478.8 295 78.6
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.9e-133 478.8 295 79.0
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 9.6e-132 474.2 337 71.2
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 2.8e-131 472.6 337 72.4
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 4.9e-128 461.8 363 66.4
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 4.9e-128 461.8 323 71.8
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 5.4e-127 458.4 351 67.0
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 7.1e-127 458.0 279 80.3
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 4.6e-126 455.3 283 78.4
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.9e-124 449.9 337 70.6
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 9.6e-124 447.6 329 71.4
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 4.8e-123 445.3 303 74.3
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 8.1e-123 444.5 353 67.7
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 8.1e-123 444.5 281 77.6
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 1.7e-120 436.8 289 75.4
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 5.1e-117 425.2 327 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.1e-114 417.5 331 62.8
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 4.5e-113 412.1 294 68.0
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 4.5e-113 412.1 312 68.9
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.2e-111 406.0 272 75.0
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.6e-110 403.7 298 68.1
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.7e-110 402.9 290 71.4
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 6.0e-110 401.7 284 72.9
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 6.0e-110 401.7 311 65.6
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 4.6e-102 375.6 267 72.3
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 2.3e-101 373.2 292 67.1
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.9e-94 348.2 305 61.0
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.9e-92 343.6 228 75.9
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 2.2e-83 313.5 230 70.9
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 3.7e-83 312.8 230 71.3
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 3.2e-63 246.5 153 74.5
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.1e-62 242.3 337 46.0
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.2e-60 238.0 139 83.5
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.6e-60 236.9 139 79.9
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.5e-55 218.4 188 63.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.6e-54 217.6 132 76.5
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 4.4e-52 209.5 146 74.7
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 2.3e-48 197.2 108 85.2
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 4.3e-47 193.0 108 82.4
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 7.5e-36 155.6 279 40.9
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 6.4e-35 152.5 129 55.8
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.1e-34 151.8 112 67.0
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 6.0e-33 146.0 318 32.4
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 4.7e-30 136.3 117 60.7
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 6.0e-25 119.4 172 45.9
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 3.0e-24 117.1 86 67.4
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.2e-22 111.7 300 31.7
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.8e-22 110.5 71 73.2
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.1e-21 107.1 84 60.7
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 5.2e-21 106.3 91 63.7
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 8.9e-21 105.5 93 64.5
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.3e-16 91.7 53 77.4
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.3e-16 90.9 64 78.1
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 8.7e-16 89.0 52 82.7
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 4.7e-14 83.2 53 77.4
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 1.8e-13 81.3 89 47.2
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 3.2e-10 70.5 40 80.0
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 5.6e-07 59.7 57 57.9
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 7.3e-07 59.3 31 87.1
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.6e-06 58.2 38 78.9
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 6.2e-06 56.2 28 89.3
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 6.2e-06 56.2 29 79.3


User provided reference genes

Program Settings