Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 2.6e-109 399.1 247 100.0
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 6.8e-54 214.9 234 67.9
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 3.4e-53 212.6 239 66.9
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 2.2e-52 209.9 218 65.1
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 8.4e-52 208.0 234 71.4
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 2.1e-47 193.4 232 64.2
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 6.8e-46 188.3 195 71.3
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 6.8e-46 188.3 195 71.3
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 2.6e-45 186.4 195 75.4
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 3.8e-44 182.6 195 70.3
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 3.8e-44 182.6 195 70.3
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 3.8e-44 182.6 195 70.3
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 2.4e-43 179.9 211 69.7
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 3.3e-40 169.5 231 61.0
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 4.4e-37 159.1 237 62.4
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 6.4e-36 155.2 237 51.1
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 5.4e-35 152.1 231 60.2
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 5.4e-35 152.1 238 60.1
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 9.3e-35 151.4 243 55.6
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 1.2e-34 151.0 223 63.2
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.1e-34 150.2 210 61.0
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 6.0e-34 148.7 234 57.7
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 1.3e-33 147.5 226 61.9
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.7e-33 147.1 230 52.6
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 2.3e-33 146.7 209 58.9
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 3.9e-33 146.0 222 53.2
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.9e-32 143.7 234 55.1
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 3.3e-32 142.9 218 55.0
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 5.6e-32 142.1 261 47.1
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 9.6e-32 141.4 232 54.7
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 2.1e-31 140.2 243 54.3
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 2.8e-31 139.8 224 60.7
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.8e-31 139.8 231 55.0
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 2.8e-31 139.8 228 53.1
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 6.2e-31 138.7 221 49.3
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 8.1e-31 138.3 222 56.3
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 8.1e-31 138.3 243 51.4
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 1.4e-30 137.5 224 56.2
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 1.8e-30 137.1 196 59.2
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 1.8e-30 137.1 223 52.0
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 5.3e-30 135.6 195 59.5
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 5.3e-30 135.6 197 59.9
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 6.9e-30 135.2 229 49.8
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 1.5e-29 134.0 234 51.3
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.0e-29 133.7 235 43.0
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 2.0e-29 133.7 234 46.2
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.6e-29 133.3 235 46.0
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 5.8e-29 132.1 245 51.0
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 9.9e-29 131.3 223 53.4
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 9.9e-29 131.3 235 47.7
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 9.9e-29 131.3 235 49.4
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 1.7e-28 130.6 232 45.7
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 2.2e-28 130.2 236 47.0
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 2.9e-28 129.8 254 47.6
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.9e-28 129.8 235 47.2
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 4.9e-28 129.0 246 52.0
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 4.9e-28 129.0 247 45.7
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 4.9e-28 129.0 224 49.1
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 4.9e-28 129.0 250 46.4
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 6.4e-28 128.6 224 49.1
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 8.4e-28 128.3 244 46.3
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 1.4e-27 127.5 224 49.1
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 1.9e-27 127.1 240 47.5
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 4.2e-27 125.9 240 48.8
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 5.5e-27 125.6 232 48.3
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 9.3e-27 124.8 203 55.2
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 9.3e-27 124.8 246 54.1
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.2e-26 124.4 206 57.8
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 1.6e-26 124.0 246 54.1
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 2.1e-26 123.6 210 52.4
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 3.5e-26 122.9 228 48.7
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 3.5e-26 122.9 213 51.2
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 1.0e-25 121.3 246 54.5
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 1.3e-25 120.9 215 55.8
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 1.8e-25 120.6 228 42.5
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 2.3e-25 120.2 222 46.8
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 5.1e-25 119.0 234 46.2
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 6.7e-25 118.6 229 50.2
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 6.7e-25 118.6 216 48.6
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 8.7e-25 118.2 244 47.5
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 1.1e-24 117.9 223 53.8
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 1.5e-24 117.5 214 47.2
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 1.9e-24 117.1 221 50.2
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 2.5e-24 116.7 223 52.0
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 5.6e-24 115.5 192 59.9
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 2.8e-23 113.2 224 47.8
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 4.8e-23 112.5 224 40.2
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 4.8e-23 112.5 222 45.9
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.7e-20 104.0 229 49.3
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.7e-20 104.0 229 49.3
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.2e-18 97.8 193 52.3
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 1.2e-18 97.8 202 49.5
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 1.2e-18 97.8 244 48.0
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 1.6e-18 97.4 212 42.5
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 5.1e-17 92.4 248 47.6
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 1.5e-16 90.9 230 37.8
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 3.3e-16 89.7 206 47.6
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 1.3e-15 87.8 254 32.7
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 1.6e-15 87.4 212 47.2
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 1.2e-13 81.3 221 37.6
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 1.7e-12 77.4 58 65.5
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 3.8e-12 76.3 204 37.3
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 8.4e-12 75.1 204 44.6
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 8.4e-12 75.1 151 58.3
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 1.1e-11 74.7 61 60.7
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 1.1e-11 74.7 204 39.2
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 4.2e-11 72.8 221 45.2
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.2e-10 71.2 41 80.5
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 5.1e-09 65.9 122 43.4
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 6.7e-09 65.5 42 78.6
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 1.5e-08 64.3 226 42.9
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 2.5e-08 63.5 211 31.8
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.7e-08 61.6 32 90.6
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 6.3e-07 58.9 50 62.0
BcaB01g03779 Brassica carinata HOM05D002337 ORTHO05D002412 4.1e-06 56.2 62 51.6
BolC3t14817H Brassica oleracea HOM05D002337 ORTHO05D002412 4.1e-06 56.2 62 51.6
CSS0046032 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 4.1e-06 56.2 54 51.9
Dinv35665 Davidia involucrata HOM05D002337 ORTHO05D002412 4.1e-06 56.2 47 55.3
Thecc.05G047800 Theobroma cacao HOM05D002337 ORTHO05D002412 4.1e-06 56.2 61 50.8
A03p20620 Brassica napus HOM05D002337 ORTHO05D002412 5.3e-06 55.8 62 50.0
C03p24240 Brassica napus HOM05D002337 ORTHO05D002412 5.3e-06 55.8 62 51.6
BraA03t11304Z Brassica rapa HOM05D002337 ORTHO05D002412 5.3e-06 55.8 62 50.0
Cpa.g.sc1.312 Carica papaya HOM05D002337 ORTHO05D002412 6.9e-06 55.5 52 53.8
Nn2g11148 Nelumbo nucifera HOM05D006303 ORTHO05D008007 6.9e-06 55.5 32 84.4
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 6.9e-06 55.5 204 34.8


User provided reference genes

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