Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G10000 Aethionema arabicum HOM05D008255 ORTHO05D003284 1.1e-68 263.1 127 100.0
BolC7t44697H Brassica oleracea HOM05D008255 ORTHO05D003284 2.5e-28 129.0 125 58.4
C07p41630 Brassica napus HOM05D008255 ORTHO05D011943 7.4e-28 127.5 125 57.6
A02p39410 Brassica napus HOM05D008255 ORTHO05D003284 1.3e-27 126.7 128 59.4
AT5G26690 Arabidopsis thaliana HOM05D008255 ORTHO05D003284 8.2e-27 124.0 124 54.0
Sp3g04810 Schrenkiella parvula HOM05D008255 ORTHO05D003284 1.8e-26 122.9 124 52.4
BcaC03g17875 Brassica carinata HOM05D008255 ORTHO05D003284 3.1e-26 122.1 125 56.8
A06p36870 Brassica napus HOM05D008255 ORTHO05D003284 3.1e-26 122.1 129 55.0
BraA02t08910Z Brassica rapa HOM05D008255 ORTHO05D003284 1.2e-25 120.2 121 57.9
Carub.0006s2427 Capsella rubella HOM05D008255 ORTHO05D003284 1.5e-25 119.8 125 53.6
AL6G38500 Arabidopsis lyrata HOM05D008255 ORTHO05D003284 2.6e-25 119.0 124 51.6
BraA06t26610Z Brassica rapa HOM05D008255 ORTHO05D011943 2.6e-25 119.0 126 55.6
BolC2t11969H Brassica oleracea HOM05D008255 ORTHO05D003284 5.8e-25 117.9 123 56.9
Aa31LG5G16330 Aethionema arabicum HOM05D008255 ORTHO05D003284 1.3e-24 116.7 154 46.1
CARHR186920 Cardamine hirsuta HOM05D008255 ORTHO05D003284 1.3e-24 116.7 124 54.0
Thhalv10005163m.g Eutrema salsugineum HOM05D008255 ORTHO05D003284 1.3e-24 116.7 124 53.2
BcaB07g29967 Brassica carinata HOM05D008255 ORTHO05D003284 1.7e-24 116.3 124 55.6
C05p61350 Brassica napus HOM05D008255 ORTHO05D003284 1.1e-23 113.6 134 50.0
BolC1t05653H Brassica oleracea HOM05D008255 ORTHO05D003284 2.5e-23 112.5 142 50.0
BcaC09g47861 Brassica carinata HOM05D008255 ORTHO05D003284 9.3e-23 110.5 124 51.6
A05p42140 Brassica napus HOM05D008255 ORTHO05D003284 2.1e-22 109.4 134 49.3
THA.LOC104818765 Tarenaya hassleriana HOM05D008255 ORTHO05D003284 2.1e-22 109.4 128 48.4
BraA01t04464Z Brassica rapa HOM05D008255 ORTHO05D003284 6.0e-22 107.8 141 48.2
Thhalv10021753m.g Eutrema salsugineum HOM05D008255 ORTHO05D003284 7.9e-22 107.5 77 66.2
Carub.0003s0529 Capsella rubella HOM05D008255 ORTHO05D003284 5.1e-21 104.8 124 48.4
AT3G05920 Arabidopsis thaliana HOM05D008255 ORTHO05D003284 6.7e-21 104.4 124 47.6
AL3G16680 Arabidopsis lyrata HOM05D008255 ORTHO05D003284 8.7e-21 104.0 124 47.6
C02p59140 Brassica napus HOM05D008255 ORTHO05D003284 2.5e-20 102.4 146 46.6
Sp2g21330 Schrenkiella parvula HOM05D008255 ORTHO05D003284 5.7e-20 101.3 124 49.2
THA.LOC104820102 Tarenaya hassleriana HOM05D008255 ORTHO05D003284 7.4e-20 100.9 72 65.3
CARHR080380 Cardamine hirsuta HOM05D008255 ORTHO05D003284 1.3e-19 100.1 139 45.3
BcaNung07316 Brassica carinata HOM05D008255 ORTHO05D003284 3.2e-15 85.5 59 69.5
CSS0023371 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 1.2e-14 83.6 94 42.6
Atru.chr12.1510 Acer truncatum HOM05D004004 ORTHO05D003284 2.7e-14 82.4 89 50.6
PGR031G3823 Punica granatum HOM05D004004 ORTHO05D003284 7.9e-14 80.9 115 43.5
QL03p011303 Quercus lobata HOM05D004004 ORTHO05D003284 1.8e-13 79.7 107 43.0
Migut.N00981 Erythranthe guttata HOM05D004004 ORTHO05D003284 3.0e-13 79.0 94 45.7
Prupe.8G018500 Prunus persica HOM05D004004 ORTHO05D003284 5.1e-13 78.2 91 45.1
MBI18_g28922_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 6.7e-13 77.8 99 46.5
Actinidia22847 Actinidia chinensis HOM05D004004 ORTHO05D003284 8.8e-13 77.4 103 43.7
GSVIVG01036224001 Vitis vinifera HOM05D004004 ORTHO05D003284 8.8e-13 77.4 128 38.3
Dinv42932 Davidia involucrata HOM05D004004 ORTHO05D003284 1.1e-12 77.0 73 47.9
Dinv43168 Davidia involucrata HOM05D004004 ORTHO05D003284 1.1e-12 77.0 73 47.9
Actinidia38530 Actinidia chinensis HOM05D004004 ORTHO05D003284 2.5e-12 75.9 104 39.4
TWI12G0300 Tripterygium wilfordii HOM05D000607 ORTHO05D003284 2.5e-12 75.9 123 40.7
Oeu000178.1 Olea europaea HOM05D004004 ORTHO05D003284 5.7e-12 74.7 76 47.4
TAR633G0312 Trochodendron aralioides HOM05D004004 ORTHO05D003284 5.7e-12 74.7 123 37.4
FvH4_2g14740 Fragaria vesca HOM05D004004 ORTHO05D003284 9.7e-12 73.9 123 37.4
CANSAT80G0904 Cannabis sativa HOM05D004004 ORTHO05D003284 1.3e-11 73.6 91 42.9
FvH4_2g14710 Fragaria vesca HOM05D004004 ORTHO05D003284 1.3e-11 73.6 91 44.0
FAN15G2223 Fragaria x ananassa HOM05D004004 ORTHO05D003284 1.3e-11 73.6 91 44.0
FAN24G1883 Fragaria x ananassa HOM05D004004 ORTHO05D003284 1.3e-11 73.6 91 44.0
Aa31sc360G30 Aethionema arabicum HOM05D008255 ORTHO05D003284 1.7e-11 73.2 62 59.7
Dinv42931 Davidia involucrata HOM05D004004 ORTHO05D003284 2.2e-11 72.8 129 34.9
Dinv43169 Davidia involucrata HOM05D004004 ORTHO05D003284 2.2e-11 72.8 129 34.9
Actinidia01655 Actinidia chinensis HOM05D004004 ORTHO05D003284 3.7e-11 72.0 107 39.3
MBI18_g28925_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 3.7e-11 72.0 77 49.4
HanXRQChr16g0528781 Helianthus annuus HOM05D008255 ORTHO05D003284 8.2e-11 70.9 71 45.1
Manes.13G076069 Manihot esculenta HOM05D004004 ORTHO05D003284 2.4e-10 69.3 104 37.5
PGR119G0576 Punica granatum HOM05D004004 ORTHO05D003284 2.4e-10 69.3 105 41.9
Oeu025680.1 Olea europaea HOM05D004004 ORTHO05D003284 4.1e-10 68.6 123 35.0
CDE08G1315 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 1.5e-09 66.6 109 33.9
HanXRQChr09g0250511 Helianthus annuus HOM05D004004 ORTHO05D003284 1.5e-09 66.6 84 40.5
HanXRQChr09g0250531 Helianthus annuus HOM05D004004 ORTHO05D003284 1.5e-09 66.6 91 42.9
CDE06G0543 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 2.0e-09 66.2 126 32.5
BcaC05g30079 Brassica carinata HOM05D008255 ORTHO05D003284 3.4e-09 65.5 133 38.3
Lsat_1_v5_gn_9_81441 Lactuca sativa HOM05D000607 ORTHO05D003284 3.4e-09 65.5 96 37.5
HanXRQChr13g0393911 Helianthus annuus HOM05D000607 ORTHO05D000518 4.5e-09 65.1 75 45.3
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 5.9e-09 64.7 85 43.5
CDE06G0974 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 7.7e-09 64.3 110 31.8
Ah.11g050090 Amaranthus hybridus HOM05D004004 ORTHO05D003284 1.0e-08 63.9 136 37.5
HanXRQChr02g0031231 Helianthus annuus HOM05D000607 ORTHO05D003284 1.0e-08 63.9 75 42.7
CDE06G2437 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 1.3e-08 63.5 113 33.6
HanXRQChr09g0250491 Helianthus annuus HOM05D000607 ORTHO05D003284 1.3e-08 63.5 90 37.8
Potri.018G148900 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.3e-08 63.5 107 34.6
Ciclev10027136m.g Citrus clementina HOM05D004004 ORTHO05D003284 1.7e-08 63.2 75 41.3
Zm00001eb432750 Zea mays HOM05D004004 ORTHO05D003284 1.7e-08 63.2 69 43.5
AUR62031945 Chenopodium quinoa HOM05D004004 ORTHO05D003284 2.2e-08 62.8 86 43.0
Potri.005G120200 Populus trichocarpa HOM05D004004 ORTHO05D003284 3.8e-08 62.0 75 44.0
AUR62022233 Chenopodium quinoa HOM05D004004 ORTHO05D003284 5.0e-08 61.6 149 33.6
Lj2g0016762 Lotus japonicus HOM05D004004 ORTHO05D003284 5.0e-08 61.6 78 42.3
Rhsim05G0125300 Rhododendron simsii HOM05D004004 ORTHO05D003284 5.0e-08 61.6 77 35.1
Rhsim06G0029400 Rhododendron simsii HOM05D004004 ORTHO05D003284 5.0e-08 61.6 92 33.7
CANSAT25G0030 Cannabis sativa HOM05D004004 ORTHO05D003284 6.5e-08 61.2 96 33.3
AUR62033201 Chenopodium quinoa HOM05D004004 ORTHO05D003284 6.5e-08 61.2 104 37.5
Nn1g09210 Nelumbo nucifera HOM05D004004 ORTHO05D003284 6.5e-08 61.2 73 34.2
Potri.007G021200 Populus trichocarpa HOM05D004004 ORTHO05D003284 6.5e-08 61.2 75 42.7
AUR62015036 Chenopodium quinoa HOM05D004004 ORTHO05D003284 8.5e-08 60.8 72 37.5
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 1.1e-07 60.5 97 34.0
EL10As8g23910 Beta vulgaris HOM05D004004 ORTHO05D003284 1.4e-07 60.1 70 40.0
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.4e-07 60.1 76 42.1
FAN23G2735 Fragaria x ananassa HOM05D004004 ORTHO05D003284 1.4e-07 60.1 76 42.1
Sabra07G0018100 Salix brachista HOM05D004004 ORTHO05D003284 1.4e-07 60.1 75 41.3
ECA238G0774 Erigeron canadensis HOM05D004004 ORTHO05D003284 1.9e-07 59.7 77 41.6
FAN28G2460 Fragaria x ananassa HOM05D004004 ORTHO05D003284 1.9e-07 59.7 76 42.1
PSO541G0719 Papaver somniferum HOM05D004004 ORTHO05D003284 1.9e-07 59.7 79 41.8
RcHm_v2.0_Chr2g0100871 Rosa chinensis HOM05D004004 ORTHO05D003284 1.9e-07 59.7 76 43.4
TWI53G0327 Tripterygium wilfordii HOM05D004004 ORTHO05D003284 1.9e-07 59.7 75 42.7
CSS0049012 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 2.5e-07 59.3 78 42.3
CANSAT01G1672 Cannabis sativa HOM05D004004 ORTHO05D003284 2.5e-07 59.3 82 41.5
Sed0027426 Sechium edule HOM05D000607 ORTHO05D000518 2.5e-07 59.3 83 41.0
FvH4_1g12761 Fragaria vesca HOM05D004004 ORTHO05D003284 3.2e-07 58.9 76 40.8
Nn3g19202 Nelumbo nucifera HOM05D008255 ORTHO05D003284 3.2e-07 58.9 95 33.7
QL06p035435 Quercus lobata HOM05D004004 ORTHO05D003284 3.2e-07 58.9 75 42.7
Sopen02g029610 Solanum pennellii HOM05D004004 ORTHO05D003284 3.2e-07 58.9 76 40.8
Aqoxy6G01169 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 4.2e-07 58.5 69 46.4
CiPaw.07G049200 Carya illinoinensis HOM05D004004 ORTHO05D003284 4.2e-07 58.5 75 44.0
Nitab4.5_0005980g0010 Nicotiana tabacum HOM05D004004 ORTHO05D003284 4.2e-07 58.5 76 43.4
Cfa006895 Carpinus fangiana HOM05D004004 ORTHO05D003284 5.5e-07 58.2 92 41.3
MBI10_g00769_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 5.5e-07 58.2 70 42.9
PGR119G0532 Punica granatum HOM05D004004 ORTHO05D003284 5.5e-07 58.2 76 39.5
Atru.chr13.424 Acer truncatum HOM05D004004 ORTHO05D003284 7.2e-07 57.8 107 31.8
Nn5g28777 Nelumbo nucifera HOM05D000913 ORTHO05D000687 7.2e-07 57.8 98 36.7
Os04g0661100 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 7.2e-07 57.8 71 38.0
Gorai.004G160000 Gossypium raimondii HOM05D000607 ORTHO05D000518 9.4e-07 57.4 75 38.7
Aqoxy6G01170 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 1.2e-06 57.0 109 35.8
Gohir.A08G132700 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.2e-06 57.0 75 38.7
Gohir.D08G154100 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.2e-06 57.0 74 39.2
HanXRQChr16g0504071 Helianthus annuus HOM05D000607 ORTHO05D000518 1.2e-06 57.0 75 40.0
Nn5g28779 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.2e-06 57.0 101 36.6
Peaxi162Scf00418g00071 Petunia axillaris HOM05D004004 ORTHO05D003284 1.2e-06 57.0 76 40.8
Phvul.002G033800 Phaseolus vulgaris HOM05D004004 ORTHO05D003284 1.2e-06 57.0 75 38.7
Prupe.7G158500 Prunus persica HOM05D004004 ORTHO05D003284 1.2e-06 57.0 75 42.7
TPR.G2394 Trifolium pratense HOM05D004004 ORTHO05D003284 1.2e-06 57.0 73 37.0
Eucgr.I02406 Eucalyptus grandis HOM05D004004 ORTHO05D003284 1.6e-06 56.6 75 38.7
PSO782G3559 Papaver somniferum HOM05D000607 ORTHO05D000518 1.6e-06 56.6 79 36.7
HPP92_021094 Vanilla planifolia HOM05D000607 ORTHO05D000518 1.6e-06 56.6 77 39.0
Cpa.g.sc6.165 Carica papaya HOM05D004004 ORTHO05D003284 2.1e-06 56.2 70 41.4
CiPaw.02G034100 Carya illinoinensis HOM05D000607 ORTHO05D000518 2.1e-06 56.2 75 37.3
Glyma.11G071500 Glycine max HOM05D004004 ORTHO05D003284 2.1e-06 56.2 75 37.3
Nitab4.5_0003001g0020 Nicotiana tabacum HOM05D004004 ORTHO05D003284 2.1e-06 56.2 120 35.8
Zm00001eb156800 Zea mays HOM05D008255 ORTHO05D003284 2.1e-06 56.2 70 38.6
CAN.G358.44 Capsicum annuum HOM05D004004 ORTHO05D003284 2.7e-06 55.8 70 44.3
ClCG01G000900 Citrullus lanatus HOM05D000607 ORTHO05D000518 2.7e-06 55.8 76 43.4
MELO3C005841.2 Cucumis melo HOM05D000607 ORTHO05D000518 2.7e-06 55.8 76 43.4
HanXRQChr14g0440601 Helianthus annuus HOM05D004004 ORTHO05D003284 2.7e-06 55.8 77 39.0
Hma1.2p1_0775F.1_g216490 Hydrangea macrophylla HOM05D004004 ORTHO05D003284 2.7e-06 55.8 90 32.2
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.6e-06 55.5 77 35.1
Haze_15557 Corylus avellana HOM05D000607 ORTHO05D000518 3.6e-06 55.5 75 37.3
Dinv40018 Davidia involucrata HOM05D004004 ORTHO05D003284 3.6e-06 55.5 74 43.2
ECA236G3928 Erigeron canadensis HOM05D008255 ORTHO05D003284 3.6e-06 55.5 124 33.1
FAN26G1971 Fragaria x ananassa HOM05D008813 ORTHO05D003284 3.6e-06 55.5 76 42.1
Lsat_1_v5_gn_4_117321 Lactuca sativa HOM05D000607 ORTHO05D003284 3.6e-06 55.5 71 31.0
Nn5g28781 Nelumbo nucifera HOM05D000913 ORTHO05D000687 3.6e-06 55.5 101 38.6
Hund11714 Selenicereus undatus HOM05D000607 ORTHO05D000518 3.6e-06 55.5 81 38.3
CiPaw.08G139700 Carya illinoinensis HOM05D004004 ORTHO05D003284 4.7e-06 55.1 73 45.2
CsaV3_5G001030 Cucumis sativus L. HOM05D000607 ORTHO05D000518 4.7e-06 55.1 76 43.4
HanXRQChr02g0049341 Helianthus annuus HOM05D000607 ORTHO05D000518 4.7e-06 55.1 75 38.7
MD15G1023400 Malus domestica HOM05D004004 ORTHO05D003284 4.7e-06 55.1 77 33.8
Medtr5g020960 Medicago truncatula HOM05D004004 ORTHO05D003284 4.7e-06 55.1 88 35.2
SEGI_21260 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 4.7e-06 55.1 67 41.8
Actinidia19203 Actinidia chinensis HOM05D004004 ORTHO05D003284 6.1e-06 54.7 69 39.1
Actinidia22522 Actinidia chinensis HOM05D004004 ORTHO05D003284 6.1e-06 54.7 125 27.2
Sabra06G0001900 Salix brachista HOM05D000913 ORTHO05D000687 6.1e-06 54.7 76 38.2
VMungo1215G3070 Vigna mungo HOM05D004004 ORTHO05D003284 6.1e-06 54.7 138 30.4
Zm00001eb127390 Zea mays HOM05D008255 ORTHO05D003284 6.1e-06 54.7 79 40.5
CSS0048498 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 7.9e-06 54.3 76 38.2
Nn3g19201 Nelumbo nucifera HOM05D008255 ORTHO05D003284 7.9e-06 54.3 49 49.0
Hund13999 Selenicereus undatus HOM05D004004 ORTHO05D003284 7.9e-06 54.3 93 37.6


User provided reference genes

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