Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G9620 Aethionema arabicum HOM05D004685 ORTHO05D005412 8.9e-113 410.2 199 100.0
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 2.2e-66 256.1 164 80.5
Thhalv10016666m.g Eutrema salsugineum HOM05D004685 ORTHO05D005412 1.7e-63 246.5 163 76.7
A04p23420 Brassica napus HOM05D004685 ORTHO05D005412 3.8e-63 245.4 163 77.3
C04p59720 Brassica napus HOM05D004685 ORTHO05D005412 3.8e-63 245.4 163 77.3
BolC4t27480H Brassica oleracea HOM05D002568 ORTHO05D005412 3.8e-63 245.4 163 77.3
BraA04t17869Z Brassica rapa HOM05D004685 ORTHO05D005412 3.8e-63 245.4 163 77.3
Sp4g13230 Schrenkiella parvula HOM05D004685 ORTHO05D005412 6.5e-63 244.6 163 76.7
BcaC01g06012 Brassica carinata HOM05D004685 ORTHO05D005412 1.1e-62 243.8 163 76.7
CARHR124210 Cardamine hirsuta HOM05D004685 ORTHO05D005412 1.1e-62 243.8 163 76.1
AL4G25610 Arabidopsis lyrata HOM05D004685 ORTHO05D005412 1.9e-62 243.0 163 76.1
Carub.0004s1189 Capsella rubella HOM05D004685 ORTHO05D005412 1.9e-62 243.0 163 76.1
BcaB01g04083 Brassica carinata HOM05D004685 ORTHO05D005412 2.5e-62 242.7 163 74.8
AT2G30710 Arabidopsis thaliana HOM05D004685 ORTHO05D005412 5.5e-62 241.5 163 75.5
MD04G1046900 Malus domestica HOM05D004685 ORTHO05D005412 9.4e-62 240.7 163 75.5
C03p20270 Brassica napus HOM05D004685 ORTHO05D005412 1.6e-61 240.0 163 74.2
Actinidia34572 Actinidia chinensis HOM05D004685 ORTHO05D005412 2.7e-61 239.2 165 73.9
THA.LOC104815520 Tarenaya hassleriana HOM05D004685 ORTHO05D005412 2.7e-61 239.2 192 67.2
A03p17170 Brassica napus HOM05D004685 ORTHO05D005412 3.6e-61 238.8 163 73.0
Prupe.1G201500 Prunus persica HOM05D004685 ORTHO05D005412 3.6e-61 238.8 162 74.7
MD11G1250200 Malus domestica HOM05D004685 ORTHO05D005412 4.6e-61 238.4 162 73.5
Atru.chr4.1348 Acer truncatum HOM05D004685 ORTHO05D005412 6.1e-61 238.0 162 73.5
Cfa015223 Carpinus fangiana HOM05D004685 ORTHO05D005412 6.1e-61 238.0 162 74.1
MELO3C017779.2 Cucumis melo HOM05D004685 ORTHO05D005412 6.1e-61 238.0 162 73.5
MD03G1229700 Malus domestica HOM05D004685 ORTHO05D005412 7.9e-61 237.7 177 69.5
Eucgr.A00035 Eucalyptus grandis HOM05D004685 ORTHO05D005412 1.0e-60 237.3 162 74.1
Thecc.04G171300 Theobroma cacao HOM05D004685 ORTHO05D005412 1.0e-60 237.3 162 72.2
MSTRG.24569 Avicennia marina HOM05D004685 ORTHO05D005412 1.4e-60 236.9 162 72.8
CAN.G31.7 Capsicum annuum HOM05D004685 ORTHO05D005412 1.4e-60 236.9 192 65.1
FvH4_3g19760 Fragaria vesca HOM05D004685 ORTHO05D005412 1.4e-60 236.9 162 73.5
FAN11G3422 Fragaria x ananassa HOM05D004685 ORTHO05D005412 1.4e-60 236.9 162 73.5
FAN25G3192 Fragaria x ananassa HOM05D004685 ORTHO05D005412 1.4e-60 236.9 162 73.5
Phvul.005G155500 Phaseolus vulgaris HOM05D004685 ORTHO05D005412 1.4e-60 236.9 162 72.8
Prupe.4G179600 Prunus persica HOM05D004685 ORTHO05D005412 1.4e-60 236.9 177 68.4
Sed0003070 Sechium edule HOM05D004685 ORTHO05D005412 1.4e-60 236.9 162 71.6
Glyma.15G027700 Glycine max HOM05D004685 ORTHO05D005412 1.8e-60 236.5 162 72.2
TWI63G0381 Tripterygium wilfordii HOM05D004685 ORTHO05D005412 1.8e-60 236.5 162 72.8
VMungo1080G1803 Vigna mungo HOM05D004685 ORTHO05D005412 1.8e-60 236.5 174 69.5
CsaV3_4G002620 Cucumis sativus L. HOM05D004685 ORTHO05D005412 2.3e-60 236.1 162 72.8
Glyma.13G346500 Glycine max HOM05D004685 ORTHO05D005412 2.3e-60 236.1 162 72.8
Lj3g0020450 Lotus japonicus HOM05D004685 ORTHO05D005412 2.3e-60 236.1 162 72.8
Lalb_Chr24g0396631 Lupinus albus HOM05D004685 ORTHO05D005412 2.3e-60 236.1 192 65.1
SGA_v2.0_scaffold25G10992 Striga asiatica HOM05D004685 ORTHO05D005412 2.3e-60 236.1 162 72.8
GSVIVG01038095001 Vitis vinifera HOM05D004685 ORTHO05D005412 2.3e-60 236.1 162 73.5
Manes.11G127300 Manihot esculenta HOM05D004685 ORTHO05D005412 3.0e-60 235.7 162 72.2
CSS0040744 Camellia sinensis var. sinensis HOM05D004685 ORTHO05D005412 3.9e-60 235.3 162 73.5
FAN16G2549 Fragaria x ananassa HOM05D004685 ORTHO05D005412 3.9e-60 235.3 162 72.8
CANSAT54G0526 Cannabis sativa HOM05D004685 ORTHO05D005412 5.1e-60 235.0 162 72.8
Duzib212G0895 Durio zibethinus HOM05D004685 ORTHO05D005412 5.1e-60 235.0 162 71.6
Manes.04G048500 Manihot esculenta HOM05D004685 ORTHO05D005412 5.1e-60 235.0 162 72.2
Medtr4g068180 Medicago truncatula HOM05D004685 ORTHO05D005412 5.1e-60 235.0 163 71.2
Ca_01238_v3 Cicer arietinum L. HOM05D004685 ORTHO05D005412 6.7e-60 234.6 162 72.8
Duzib268G0117 Durio zibethinus HOM05D004685 ORTHO05D005412 6.7e-60 234.6 162 71.6
Gohir.A02G092700 Gossypium hirsutum HOM05D004685 ORTHO05D005412 6.7e-60 234.6 162 72.2
Psat5g291640 Pisum sativum HOM05D004685 ORTHO05D005412 6.7e-60 234.6 162 72.2
TPR.G6599 Trifolium pratense HOM05D004685 ORTHO05D005412 6.7e-60 234.6 162 72.2
Solyc11g005010.3 Solanum lycopersicum HOM05D004685 ORTHO05D005412 8.8e-60 234.2 192 64.6
Sopen11g001030 Solanum pennellii HOM05D004685 ORTHO05D005412 8.8e-60 234.2 192 64.6
Ciclev10020095m.g Citrus clementina HOM05D004685 ORTHO05D005412 1.1e-59 233.8 162 71.0
TWI38G2236 Tripterygium wilfordii HOM05D004685 ORTHO05D005412 1.1e-59 233.8 192 65.1
Nitab4.5_0004047g0070 Nicotiana tabacum HOM05D004685 ORTHO05D005412 1.5e-59 233.4 162 72.2
Migut.N03084 Erythranthe guttata HOM05D004685 ORTHO05D005412 2.0e-59 233.0 162 70.4
Medtr2g099380 Medicago truncatula HOM05D004685 ORTHO05D005412 2.0e-59 233.0 162 71.6
Cc03_g11850 Coffea canephora HOM05D004685 ORTHO05D005412 2.6e-59 232.6 192 65.1
Lalb_Chr14g0372611 Lupinus albus HOM05D004685 ORTHO05D005412 2.6e-59 232.6 192 64.1
arahy.Tifrunner.gnm1.ann1.H82CQV Arachis hypogaea HOM05D004685 ORTHO05D005412 3.3e-59 232.3 192 63.5
Gorai.005G125700 Gossypium raimondii HOM05D004685 ORTHO05D005412 3.3e-59 232.3 162 71.0
arahy.Tifrunner.gnm1.ann1.D04CBC Arachis hypogaea HOM05D004685 ORTHO05D005412 4.4e-59 231.9 161 72.0
ClCG07G015070 Citrullus lanatus HOM05D004685 ORTHO05D005412 4.4e-59 231.9 145 78.6
PGR014G0004 Punica granatum HOM05D004685 ORTHO05D005412 4.4e-59 231.9 163 71.2
PGR083G2412 Punica granatum HOM05D004685 ORTHO05D005412 4.4e-59 231.9 163 71.2
TPR.G34220 Trifolium pratense HOM05D004685 ORTHO05D005412 4.4e-59 231.9 163 69.9
Ca_20808_v3 Cicer arietinum L. HOM05D004685 ORTHO05D005412 5.7e-59 231.5 192 64.1
arahy.Tifrunner.gnm1.ann1.0IGH5Q Arachis hypogaea HOM05D004685 ORTHO05D005412 7.4e-59 231.1 192 63.5
Gohir.A10G141300 Gossypium hirsutum HOM05D004685 ORTHO05D005412 7.4e-59 231.1 162 70.4
Gohir.D10G125600 Gossypium hirsutum HOM05D004685 ORTHO05D005412 7.4e-59 231.1 162 70.4
Gorai.011G138600 Gossypium raimondii HOM05D004685 ORTHO05D005412 7.4e-59 231.1 162 70.4
Lalb_Chr22g0352021 Lupinus albus HOM05D004685 ORTHO05D005412 7.4e-59 231.1 192 64.1
Dinv05093 Davidia involucrata HOM05D004685 ORTHO05D005412 9.7e-59 230.7 192 64.1
Gohir.D02G110800 Gossypium hirsutum HOM05D004685 ORTHO05D005412 9.7e-59 230.7 162 71.0
Nn1g09723 Nelumbo nucifera HOM05D004685 ORTHO05D005412 9.7e-59 230.7 192 63.5
CiPaw.02G103100 Carya illinoinensis HOM05D004685 ORTHO05D005412 1.3e-58 230.3 162 71.0
Sabra07G0108900 Salix brachista HOM05D004685 ORTHO05D005412 1.3e-58 230.3 175 68.0
Sed0022333 Sechium edule HOM05D004685 ORTHO05D005412 1.3e-58 230.3 162 69.8
arahy.Tifrunner.gnm1.ann1.YPS1PN Arachis hypogaea HOM05D004685 ORTHO05D005412 1.7e-58 229.9 161 71.4
Potri.007G134200 Populus trichocarpa HOM05D004685 ORTHO05D005412 1.7e-58 229.9 162 71.6
HPP92_012799 Vanilla planifolia HOM05D004685 ORTHO05D005412 1.7e-58 229.9 163 69.3
Glyma.11G125000 Glycine max HOM05D004685 ORTHO05D005412 2.2e-58 229.6 162 70.4
RcHm_v2.0_Chr5g0033161 Rosa chinensis HOM05D004685 ORTHO05D005412 2.2e-58 229.6 162 72.2
Dinv44167 Davidia involucrata HOM05D004685 ORTHO05D005412 2.8e-58 229.2 162 70.4
FAN21G0673 Fragaria x ananassa HOM05D004685 ORTHO05D005412 2.8e-58 229.2 162 71.6
Peaxi162Scf00126g00812 Petunia axillaris HOM05D004685 ORTHO05D005412 2.8e-58 229.2 162 69.8
EL10Ac3g06030 Beta vulgaris HOM05D004685 ORTHO05D005412 3.7e-58 228.8 162 71.0
CiPaw.01G173200 Carya illinoinensis HOM05D004685 ORTHO05D005412 3.7e-58 228.8 162 69.8
Lj3A151G15 Lonicera japonica HOM05D004685 ORTHO05D005412 3.7e-58 228.8 192 63.5
AUR62002365 Chenopodium quinoa HOM05D004685 ORTHO05D005412 4.8e-58 228.4 163 69.9
ATR0743G201 Amborella trichopoda HOM05D004685 ORTHO05D005412 8.2e-58 227.6 192 62.5
HanXRQChr14g0433711 Helianthus annuus HOM05D004685 ORTHO05D005412 1.1e-57 227.3 192 62.5
AUR62023820 Chenopodium quinoa HOM05D004685 ORTHO05D005412 1.4e-57 226.9 163 69.3
Psat7g208360 Pisum sativum HOM05D004685 ORTHO05D005412 1.4e-57 226.9 163 69.9
Rhsim09G0013500 Rhododendron simsii HOM05D004685 ORTHO05D005412 1.8e-57 226.5 162 69.1
TAR362G0066 Trochodendron aralioides HOM05D004685 ORTHO05D005412 1.8e-57 226.5 192 62.5
Aqoxy2G04150 Aquilegia oxysepala HOM05D004685 ORTHO05D005412 2.4e-57 226.1 192 60.9
DCAR_005442 Daucus carota HOM05D004685 ORTHO05D005412 2.4e-57 226.1 192 62.5
Phvul.011G051800 Phaseolus vulgaris HOM05D004685 ORTHO05D005412 2.4e-57 226.1 162 71.0
VMungo1127G1426 Vigna mungo HOM05D004685 ORTHO05D005412 2.4e-57 226.1 162 71.0
SalBow6G3785 Salvia bowleyana HOM05D004685 ORTHO05D005412 3.1e-57 225.7 174 64.9
Sc13g0007990 Simmondsia chinensis HOM05D004685 ORTHO05D005412 3.1e-57 225.7 175 66.3
PSO017G4600 Papaver somniferum HOM05D004685 ORTHO05D005412 5.3e-57 224.9 192 60.9
CDE07G1691 Ceratophyllum demersum HOM05D004685 ORTHO05D005412 6.9e-57 224.6 192 60.9
MBI07_g02901_MAGBIO Magnolia biondii HOM05D004685 ORTHO05D005412 6.9e-57 224.6 192 62.0
Nn7g37611 Nelumbo nucifera HOM05D004685 ORTHO05D005412 9.1e-57 224.2 192 62.5
CDE04G1604 Ceratophyllum demersum HOM05D004685 ORTHO05D005412 1.5e-56 223.4 192 60.9
PSO675G3484 Papaver somniferum HOM05D004685 ORTHO05D005412 1.5e-56 223.4 192 60.9
unitig_578.g16717 Utricularia gibba HOM05D004685 ORTHO05D005412 2.0e-56 223.0 162 67.9
Duzib151G0372 Durio zibethinus HOM05D004685 ORTHO05D005412 3.4e-56 222.2 192 60.9
Hund03187 Selenicereus undatus HOM05D004685 ORTHO05D005412 4.5e-56 221.9 161 68.9
SalBow2G2136 Salvia bowleyana HOM05D004685 ORTHO05D005412 2.9e-55 219.2 162 67.3
Os09g0515800 Oryza sativa ssp. japonica HOM05D004685 ORTHO05D005412 6.5e-55 218.0 192 59.4
ECA240G0670 Erigeron canadensis HOM05D004685 ORTHO05D005412 1.1e-54 217.2 196 56.1
MBI11_g23943_MAGBIO Magnolia biondii HOM05D004685 ORTHO05D005412 1.1e-54 217.2 192 58.9
Hund12396 Selenicereus undatus HOM05D004685 ORTHO05D005412 1.1e-54 217.2 162 67.3
Zm00001eb191360 Zea mays HOM05D004685 ORTHO05D005412 1.1e-54 217.2 192 58.9
Oeu015936.3 Olea europaea HOM05D004685 ORTHO05D005412 3.2e-54 215.7 195 60.0
Ciclev10024547m.g Citrus clementina HOM05D004685 ORTHO05D005412 2.7e-53 212.6 175 63.4
Lsat_1_v5_gn_3_111900 Lactuca sativa HOM05D004685 ORTHO05D005412 2.7e-53 212.6 145 69.7
vmacro00654 Vaccinium macrocarpon HOM05D004685 ORTHO05D005412 5.2e-52 208.4 196 56.1
AagrBONN_evm.TU.Sc2ySwM_362.1685 Anthoceros agrestis HOM05D004685 ORTHO05D005412 7.4e-51 204.5 192 55.7
Mapoly0111s0053 Marchantia polymorpha HOM05D004685 ORTHO05D005412 1.3e-50 203.8 177 59.9
SMO146G0212 Selaginella moellendorffii HOM05D004685 ORTHO05D005412 1.7e-47 193.4 162 59.9
QL10p052572 Quercus lobata HOM05D004685 ORTHO05D005412 2.5e-46 189.5 99 87.9
Pp3c9_25750 Physcomitrium patens HOM05D004685 ORTHO05D005412 6.1e-45 184.9 192 52.6
vmacro21333 Vaccinium macrocarpon HOM05D004685 ORTHO05D005412 1.2e-43 180.6 99 83.8
COL.COLO4_28386 Corchorus olitorius HOM05D004685 ORTHO05D005412 3.3e-43 179.1 133 68.4
CBR_g39554 Chara braunii HOM05D004685 ORTHO05D005412 6.3e-42 174.9 163 53.4
Cre12.g486400 Chlamydomonas reinhardtii HOM05D004685 ORTHO05D005412 2.0e-35 153.3 162 45.7
Lsat_1_v5_gn_3_104860 Lactuca sativa HOM05D004685 ORTHO05D005412 2.0e-35 153.3 192 46.4
Migut.G01286 Erythranthe guttata HOM05D004685 ORTHO05D005412 7.2e-30 134.8 133 57.1
BraA03t10991Z Brassica rapa HOM05D001857 ORTHO05D006687 4.0e-28 129.0 111 61.3
arahy.Tifrunner.gnm1.ann1.WQX55W Arachis hypogaea HOM05D000795 ORTHO05D005412 1.1e-25 120.9 86 68.6
Glyma.12G049550 Glycine max HOM05D004685 ORTHO05D005412 2.7e-24 116.3 56 94.6
Cfa025053 Carpinus fangiana HOM05D004685 ORTHO05D005412 3.0e-20 102.8 176 33.5
Cpa.g.sc9.333 Carica papaya HOM05D004685 ORTHO05D005412 2.9e-18 96.3 93 54.8
MCO01G708 Micromonas commoda HOM05D004685 ORTHO05D005412 1.1e-17 94.4 106 42.5
Zm00001eb169800 Zea mays HOM05D002521 ORTHO05D002872 8.3e-10 68.2 167 31.1
Aa31LG10G9630 Aethionema arabicum HOM05D002912 ORTHO05D003191 1.1e-09 67.8 38 81.6
Glyma.12G049600 Glycine max HOM05D004685 ORTHO05D005412 1.1e-09 67.8 81 48.1
Actinidia28579 Actinidia chinensis HOM05D004685 ORTHO05D005412 2.4e-09 66.6 69 58.0
Sabra12G0034200 Salix brachista HOM05D004685 ORTHO05D005412 2.7e-08 63.2 156 30.8
BcaB03g13470 Brassica carinata HOM05D002521 ORTHO05D002872 1.3e-07 60.8 184 27.7
CAN.G86.7 Capsicum annuum HOM05D000905 ORTHO05D000749 1.3e-07 60.8 102 40.2
A08p36690 Brassica napus HOM05D001191 ORTHO05D000979 3.0e-07 59.7 184 27.7
BraA08t35572Z Brassica rapa HOM05D001191 ORTHO05D000979 3.0e-07 59.7 184 27.7
AL1G14550 Arabidopsis lyrata HOM05D002521 ORTHO05D002872 1.1e-06 57.8 184 27.7
AT1G04830 Arabidopsis thaliana HOM05D002521 ORTHO05D002872 1.9e-06 57.0 184 27.7
Carub.0001s0407 Capsella rubella HOM05D002521 ORTHO05D002872 4.3e-06 55.8 184 27.2
Sabra11G0076000 Salix brachista HOM05D004685 ORTHO05D005412 4.3e-06 55.8 29 86.2
Sp1g03670 Schrenkiella parvula HOM05D002521 ORTHO05D002872 4.3e-06 55.8 183 28.4
A10p03210 Brassica napus HOM05D001191 ORTHO05D000979 5.6e-06 55.5 184 27.7


User provided reference genes

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