Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 6.9e-102 374.0 194 100.0
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 6.6e-52 208.0 210 63.8
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 4.3e-51 205.3 213 60.1
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 3.4e-48 195.7 201 59.2
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 3.7e-47 192.2 204 59.8
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 4.1e-46 188.7 209 58.4
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 8.6e-44 181.0 213 57.3
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.1e-43 180.6 204 55.4
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 6.2e-42 174.9 206 53.9
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 3.1e-41 172.6 198 55.6
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 3.1e-41 172.6 198 55.6
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 3.1e-41 172.6 198 55.6
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 6.8e-41 171.4 213 56.3
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.5e-40 170.2 204 52.9
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 1.7e-39 166.8 206 53.9
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 1.7e-39 166.8 202 51.5
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 2.9e-39 166.0 211 53.1
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 6.4e-39 164.9 205 50.7
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 1.1e-38 164.1 202 52.5
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 1.9e-38 163.3 204 53.4
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 2.4e-38 162.9 214 53.3
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 5.4e-38 161.8 201 53.2
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 5.4e-38 161.8 201 53.2
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 1.6e-37 160.2 213 52.1
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 1.6e-37 160.2 204 52.5
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 2.0e-37 159.8 217 51.6
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 2.0e-37 159.8 217 51.6
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 2.3e-36 156.4 210 52.4
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 2.3e-36 156.4 204 51.0
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 1.9e-35 153.3 206 51.5
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 7.3e-35 151.4 206 50.5
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 9.5e-35 151.0 206 50.0
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 2.1e-34 149.8 206 50.0
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 5.2e-33 145.2 166 54.8
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 3.4e-32 142.5 211 52.1
A04p28630 Brassica napus HOM05D008508 ORTHO05D003325 3.7e-31 139.0 205 48.8
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 3.7e-31 139.0 204 50.5
BcaB02g07768 Brassica carinata HOM05D008508 ORTHO05D003325 9.2e-30 134.4 211 48.8
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 1.2e-29 134.0 204 49.0
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 1.2e-29 134.0 209 49.8
CARHR163580 Cardamine hirsuta HOM05D008508 ORTHO05D003325 5.6e-27 125.2 252 39.3
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 6.2e-26 121.7 113 62.8
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 3.8e-23 112.5 210 42.9
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 2.4e-22 109.8 148 48.0
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 2.3e-20 103.2 210 41.9
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 1.5e-19 100.5 210 41.4
THA.LOC104824529 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.2e-18 97.4 108 49.1
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 6.0e-13 78.6 153 42.5
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 7.8e-13 78.2 123 45.5
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 1.0e-12 77.8 68 61.8
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 1.0e-12 77.8 73 64.4
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 3.9e-12 75.9 73 58.9
BcaB01g00255 Brassica carinata HOM05D008508 ORTHO05D003325 6.6e-12 75.1 88 53.4
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 6.6e-12 75.1 73 58.9
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 6.6e-12 75.1 73 58.9
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 6.6e-12 75.1 73 58.9
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 8.7e-12 74.7 73 58.9
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.9e-11 73.6 177 39.5
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 4.3e-11 72.4 94 43.6
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 5.6e-11 72.0 143 38.5
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 5.6e-11 72.0 162 37.0
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 7.3e-11 71.6 120 47.5
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 9.6e-11 71.2 154 42.9
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 9.6e-11 71.2 113 41.6
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.3e-10 70.9 123 42.3
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 3.6e-10 69.3 131 42.0
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 4.8e-10 68.9 85 51.8
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 6.2e-10 68.6 112 45.5
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 1.4e-09 67.4 63 61.9
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.4e-09 67.4 139 36.7
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 1.8e-09 67.0 83 45.8
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 1.8e-09 67.0 81 53.1
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 1.8e-09 67.0 142 39.4
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 2.4e-09 66.6 175 37.1
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 3.1e-09 66.2 67 58.2
AL5G37360 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.0e-09 65.9 68 64.7
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 6.9e-09 65.1 79 44.3
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 9.0e-09 64.7 81 51.9
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 9.0e-09 64.7 122 40.2
CARHR132130 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.2e-08 64.3 93 43.0
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.5e-08 63.9 97 46.4
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.0e-08 63.5 139 35.3
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 2.0e-08 63.5 80 53.8
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 2.6e-08 63.2 113 39.8
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.6e-08 63.2 152 37.5
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 2.6e-08 63.2 50 62.0
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 2.6e-08 63.2 169 35.5
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.4e-08 62.8 142 34.5
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.5e-08 62.4 159 36.5
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 4.5e-08 62.4 81 50.6
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 4.5e-08 62.4 164 36.0
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 7.6e-08 61.6 158 36.1
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 9.9e-08 61.2 81 49.4
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 9.9e-08 61.2 123 38.2
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 2.2e-07 60.1 43 67.4
BcaC02g07532 Brassica carinata HOM05D008508 ORTHO05D003325 2.9e-07 59.7 76 47.4
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 2.9e-07 59.7 57 57.9
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.8e-07 59.3 109 44.0
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 4.9e-07 58.9 99 38.4
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 4.9e-07 58.9 45 60.0
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 6.4e-07 58.5 75 50.7
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 6.4e-07 58.5 106 44.3
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 8.4e-07 58.2 45 60.0
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 8.4e-07 58.2 123 35.8
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 8.4e-07 58.2 85 44.7
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 8.4e-07 58.2 76 48.7
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.1e-06 57.8 143 37.1
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.1e-06 57.8 103 41.7
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.1e-06 57.8 54 59.3
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.1e-06 57.8 80 47.5
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.4e-06 57.4 57 56.1
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 1.4e-06 57.4 77 49.4
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 1.4e-06 57.4 77 49.4
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 1.4e-06 57.4 74 47.3
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.4e-06 57.4 66 51.5
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 1.9e-06 57.0 91 42.9
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.9e-06 57.0 127 37.0
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.4e-06 56.6 71 52.1
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 2.4e-06 56.6 74 45.9
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.4e-06 56.6 125 34.4
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 2.4e-06 56.6 86 46.5
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 2.4e-06 56.6 96 43.8
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 3.2e-06 56.2 75 49.3
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.2e-06 56.2 94 38.3
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 3.2e-06 56.2 78 43.6
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 4.2e-06 55.8 73 50.7
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 4.2e-06 55.8 94 38.3
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 4.2e-06 55.8 77 42.9
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 5.4e-06 55.5 65 43.1
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 5.4e-06 55.5 123 35.8
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 5.4e-06 55.5 78 48.7
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 5.4e-06 55.5 59 54.2
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 5.4e-06 55.5 142 33.1
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 7.1e-06 55.1 123 36.6
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 7.1e-06 55.1 187 32.6
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 9.3e-06 54.7 84 42.9
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 9.3e-06 54.7 125 33.6
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 9.3e-06 54.7 113 37.2


User provided reference genes

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