Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 2.8e-300 1034.6 582 100.0
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 5.3e-182 641.7 590 65.8
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 3.0e-169 599.4 594 64.1
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 1.2e-168 597.4 590 63.4
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 1.7e-167 593.6 597 63.1
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 1.9e-163 580.1 590 62.4
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 1.1e-158 564.3 599 60.6
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 2.3e-145 520.0 590 57.5
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 1.1e-134 484.6 585 55.9
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 9.2e-134 481.5 586 55.8
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 3.3e-123 446.4 590 53.6
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 3.3e-123 446.4 615 51.4
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 4.7e-122 442.6 590 53.6
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 4.7e-122 442.6 590 53.6
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 2.6e-120 436.8 615 49.6
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 1.2e-117 427.9 618 51.1
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 1.9e-102 377.5 603 49.1
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 1.6e-101 374.4 603 46.3
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 5.7e-91 339.3 644 43.6
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 9.3e-86 322.0 590 43.4
AT2G37070 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 2.7e-85 320.5 586 42.0
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 1.8e-73 281.2 601 42.1
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 1.9e-54 218.0 656 35.2
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 7.2e-54 216.1 599 36.1
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 2.7e-53 214.2 592 35.5
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.5e-51 208.4 610 35.1
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 5.9e-48 196.4 601 34.6
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.9e-48 196.4 593 34.6
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 2.9e-47 194.1 604 34.3
BcaC02g07549 Brassica carinata HOM05D003265 ORTHO05D003819 1.9e-46 191.4 596 34.9
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.2e-45 188.7 593 32.4
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.1e-45 188.0 591 32.0
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.1e-45 188.0 597 33.3
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 8.0e-45 186.0 587 34.8
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 6.8e-44 183.0 602 34.9
BraA04t18315Z Brassica rapa HOM05D003265 ORTHO05D003819 2.2e-42 177.9 497 35.6
A04p28340 Brassica napus HOM05D003265 ORTHO05D003819 6.3e-42 176.4 499 35.5
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 6.3e-42 176.4 594 34.8
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 4.5e-40 170.2 592 32.3
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 3.3e-38 164.1 599 33.7
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 9.5e-38 162.5 548 33.8
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 3.6e-37 160.6 610 34.4
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 8.0e-37 159.5 603 31.0
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 4.0e-36 157.1 562 32.0
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 4.4e-35 153.7 572 32.3
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 1.4e-33 148.7 598 32.4
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 2.4e-33 147.9 586 30.7
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 5.4e-33 146.7 587 32.2
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 1.2e-32 145.6 588 32.5
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 7.8e-32 142.9 499 32.3
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 1.0e-31 142.5 603 29.9
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 2.3e-31 141.4 555 33.3
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 5.0e-31 140.2 648 30.4
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 4.3e-30 137.1 575 32.3
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.6e-29 135.2 597 30.5
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.1e-29 134.8 572 30.9
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 1.1e-28 132.5 609 31.4
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 2.3e-28 131.3 602 30.6
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.1e-28 131.0 584 32.4
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.0e-28 130.6 563 30.9
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 4.0e-28 130.6 563 32.7
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 6.8e-28 129.8 604 30.6
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 8.9e-28 129.4 626 31.3
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 1.2e-27 129.0 586 31.4
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 2.0e-27 128.3 544 31.4
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 5.8e-27 126.7 596 29.0
AL1G31250 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 1.7e-26 125.2 88 73.9
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 2.2e-26 124.8 528 29.7
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 2.9e-26 124.4 592 28.2
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.7e-26 124.0 607 29.3
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 3.7e-26 124.0 597 30.0
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 8.3e-26 122.9 580 29.5
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 8.3e-26 122.9 501 31.7
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 8.3e-26 122.9 571 30.8
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 1.1e-25 122.5 522 31.6
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 2.4e-25 121.3 604 30.8
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.4e-25 121.3 546 30.0
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 3.2e-25 120.9 572 30.4
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 4.1e-25 120.6 523 31.7
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 5.4e-25 120.2 545 31.0
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.6e-24 118.6 522 32.0
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 7.8e-24 116.3 537 31.8
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 1.0e-23 115.9 623 31.3
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 1.7e-23 115.2 497 32.0
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 3.0e-23 114.4 576 30.6
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 6.6e-23 113.2 606 31.4
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 8.6e-23 112.8 567 32.3
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 8.6e-23 112.8 537 29.4
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.1e-22 112.5 513 30.6
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 1.5e-22 112.1 583 27.4
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 2.5e-22 111.3 619 27.5
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 7.3e-22 109.8 587 30.2
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 2.1e-21 108.2 429 31.2
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 3.6e-21 107.5 599 32.6
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 4.7e-21 107.1 610 28.2
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 8.1e-21 106.3 579 29.9
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 8.1e-21 106.3 217 38.7
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 2.3e-20 104.8 601 28.8
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 4.0e-20 104.0 562 31.7
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 5.2e-20 103.6 571 27.7
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.2e-20 103.6 591 30.6
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.2e-19 102.4 324 33.3
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 1.2e-19 102.4 568 28.5
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 1.5e-19 102.1 592 27.2
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 2.6e-19 101.3 551 29.2
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 2.6e-19 101.3 672 28.1
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 2.6e-19 101.3 629 27.5
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 2.6e-19 101.3 276 34.1
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 3.4e-19 100.9 567 27.9
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 4.4e-19 100.5 572 29.0
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 7.5e-19 99.8 581 27.7
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 1.7e-18 98.6 558 30.8
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 2.9e-18 97.8 576 27.6
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 2.9e-18 97.8 678 27.4
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 6.4e-18 96.7 551 30.3
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 1.4e-17 95.5 539 29.7
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 5.4e-17 93.6 510 28.0
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 7.1e-17 93.2 549 29.1
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 1.2e-16 92.4 535 28.2
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 1.6e-16 92.0 601 27.0
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 1.6e-16 92.0 576 28.5
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 2.1e-16 91.7 685 26.6
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 3.5e-16 90.9 166 39.2
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 6.0e-16 90.1 554 27.3
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 8.6e-15 86.3 508 25.8
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 2.5e-14 84.7 540 27.6
Gohir.D11G344100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.3e-14 84.0 508 25.4
Gorai.007G374500 Gossypium raimondii HOM05D003265 ORTHO05D003819 4.3e-14 84.0 508 25.4
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 4.3e-14 84.0 544 28.9
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 9.5e-14 82.8 594 27.4
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 9.5e-14 82.8 569 29.9
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 2.8e-13 81.3 641 27.1
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 4.7e-13 80.5 137 38.0
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 6.2e-13 80.1 567 28.7
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 1.1e-12 79.3 532 28.6
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 3.1e-12 77.8 580 27.2
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 8.9e-12 76.3 592 27.7
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 1.5e-11 75.5 575 28.2
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 1.5e-11 75.5 108 49.1
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 1.5e-11 75.5 108 49.1
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 3.4e-11 74.3 144 38.9
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 4.4e-11 73.9 539 27.3
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 9.9e-11 72.8 553 27.5
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 1.7e-10 72.0 164 36.6
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 2.2e-10 71.6 566 27.2
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 4.9e-10 70.5 161 37.3
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.9e-10 70.5 158 42.4
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 1.1e-09 69.3 537 26.4
Manes.09G080700 Manihot esculenta HOM05D003265 ORTHO05D003819 1.4e-09 68.9 408 29.2
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 2.4e-09 68.2 421 26.8
DCAR_015272 Daucus carota HOM05D003265 ORTHO05D015078 2.4e-09 68.2 521 29.6
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 7.1e-09 66.6 595 26.1
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 9.2e-09 66.2 306 29.4
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 9.2e-09 66.2 471 26.5
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 2.7e-08 64.7 545 27.3
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 2.7e-08 64.7 460 27.6
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 2.7e-08 64.7 152 37.5
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 3.5e-08 64.3 144 38.2
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 6.0e-08 63.5 562 27.0
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 7.8e-08 63.2 632 24.2
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 1.7e-07 62.0 503 27.4
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.3e-07 61.6 152 36.8
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.3e-07 61.6 575 27.7
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 2.3e-07 61.6 326 28.5
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.9e-07 60.8 467 26.1
CAN.G608.11 Capsicum annuum HOM05D003265 ORTHO05D003819 5.1e-07 60.5 282 31.9
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 6.6e-07 60.1 163 33.1
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.6e-07 60.1 565 28.3
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 8.7e-07 59.7 86 47.7
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 8.7e-07 59.7 168 33.9
Lj1g0005050 Lotus japonicus HOM05D003265 ORTHO05D003819 1.1e-06 59.3 115 38.3
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 1.1e-06 59.3 90 43.3
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 1.5e-06 58.9 122 40.2
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.5e-06 58.9 129 38.8
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.5e-06 58.9 147 36.7
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.5e-06 58.9 158 31.6
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 1.9e-06 58.5 466 26.4
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 2.5e-06 58.2 526 26.6
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 3.3e-06 57.8 457 24.1
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 4.3e-06 57.4 162 36.4
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.6e-06 57.0 133 36.1
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 9.6e-06 56.2 549 25.5


User provided reference genes

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