Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 2.3e-215 751.9 367 100.0
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 8.8e-90 334.7 355 53.5
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 3.5e-86 322.8 333 53.8
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 1.3e-85 320.9 330 53.3
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 1.2e-83 314.3 324 54.0
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 3.0e-82 309.7 339 51.9
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 1.7e-80 303.9 337 49.6
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 2.2e-80 303.5 340 50.9
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 1.9e-76 290.4 310 54.5
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 1.9e-76 290.4 310 54.5
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 2.7e-75 286.6 323 48.6
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 1.4e-66 257.7 338 48.5
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 1.7e-61 240.7 286 48.6
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.4e-55 221.1 523 31.4
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.6e-49 200.3 464 32.3
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.6e-46 189.5 304 40.1
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 4.0e-34 149.8 325 32.6
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 2.6e-33 147.1 348 30.5
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 4.6e-30 136.3 372 27.4
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 6.0e-30 136.0 368 29.1
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 3.0e-29 133.7 354 28.8
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 6.6e-29 132.5 349 28.1
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 1.2e-27 128.3 505 25.3
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.2e-27 128.3 356 27.8
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 2.1e-27 127.5 188 43.1
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 3.1e-26 123.6 364 27.7
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 4.0e-26 123.2 371 27.0
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 4.0e-26 123.2 371 27.0
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 6.9e-26 122.5 206 40.8
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 9.9e-25 118.6 355 26.8
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 1.7e-24 117.9 131 48.9
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 3.8e-24 116.7 449 25.4
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 4.9e-24 116.3 369 27.4
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 1.9e-23 114.4 348 26.4
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 1.9e-23 114.4 171 39.8
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 5.4e-23 112.8 310 28.4
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 7.1e-23 112.5 399 25.3
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 1.2e-22 111.7 379 25.3
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.2e-22 111.7 310 29.0
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 1.6e-22 111.3 335 27.5
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 4.6e-22 109.8 472 22.7
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 7.8e-22 109.0 198 36.9
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 1.0e-21 108.6 342 26.6
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.0e-21 108.6 122 48.4
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.3e-21 108.2 250 34.4
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 1.3e-21 108.2 314 29.0
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 1.7e-21 107.8 122 43.4
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 1.7e-21 107.8 476 24.2
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 1.7e-21 107.8 162 41.4
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 2.3e-21 107.5 375 26.7
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 3.0e-21 107.1 494 24.1
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.9e-21 106.7 476 23.9
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 5.1e-21 106.3 402 27.6
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 6.6e-21 105.9 314 28.7
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 1.5e-20 104.8 438 24.7
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.5e-20 104.8 122 47.5
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.9e-20 104.4 132 44.7
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 1.9e-20 104.4 503 21.9
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 2.5e-20 104.0 448 25.2
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 3.3e-20 103.6 147 41.5
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 3.3e-20 103.6 134 44.8
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 4.3e-20 103.2 200 35.5
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.3e-20 102.4 308 28.2
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.6e-19 101.3 132 43.2
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.8e-19 100.5 193 35.2
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 4.8e-19 99.8 178 33.7
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 6.2e-19 99.4 385 23.9
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 2.4e-18 97.4 124 42.7
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 2.4e-18 97.4 135 42.2
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 4.0e-18 96.7 122 44.3
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.0e-18 96.7 124 42.7
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 6.9e-18 95.9 122 43.4
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 9.0e-18 95.5 124 41.1
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 1.2e-17 95.1 150 34.7
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.0e-17 94.4 500 22.2
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 2.0e-17 94.4 134 39.6
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 4.5e-17 93.2 121 40.5
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 7.6e-17 92.4 313 26.2
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.3e-16 91.7 122 42.6
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.7e-16 91.3 189 35.4
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 2.2e-16 90.9 166 36.7
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 2.9e-16 90.5 421 22.6
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 3.8e-16 90.1 127 39.4
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 4.9e-16 89.7 210 34.3
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 6.4e-16 89.4 121 43.8
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 6.4e-16 89.4 122 41.0
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 8.4e-16 89.0 122 42.6
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 4.2e-15 86.7 142 38.0
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 7.1e-15 85.9 239 29.3
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 9.3e-15 85.5 121 43.8
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 9.3e-15 85.5 95 48.4
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.2e-14 85.1 169 30.2
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.2e-14 85.1 185 29.2
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 1.2e-14 85.1 156 35.9
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.2e-14 85.1 95 48.4
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 4.6e-14 83.2 122 40.2
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 1.0e-13 82.0 141 35.5
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.3e-13 81.6 156 35.9
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 1.8e-13 81.3 150 30.0
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 3.9e-13 80.1 185 35.1
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 3.9e-13 80.1 223 29.1
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 5.1e-13 79.7 202 30.7
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 5.1e-13 79.7 171 35.7
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 8.7e-13 79.0 131 31.3
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.5e-12 78.2 143 31.5
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.5e-12 78.2 130 33.1
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 1.9e-12 77.8 360 25.0
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 3.3e-12 77.0 122 39.3
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 4.3e-12 76.6 105 32.4
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 5.6e-12 76.3 359 24.8
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 5.6e-12 76.3 91 38.5
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 5.6e-12 76.3 144 29.2
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 9.6e-12 75.5 233 27.5
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 9.6e-12 75.5 71 40.8
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 9.6e-12 75.5 93 38.7
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 9.6e-12 75.5 184 36.4
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.3e-11 75.1 157 26.1
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 1.3e-11 75.1 149 34.9
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.3e-11 75.1 91 38.5
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.6e-11 74.7 133 31.6
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 2.1e-11 74.3 123 41.5
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 2.8e-11 73.9 226 27.0
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 3.7e-11 73.6 85 38.8
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 4.8e-11 73.2 82 40.2
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 6.2e-11 72.8 72 40.3
Ah.04g151880 Amaranthus hybridus HOM05D002477 ORTHO05D001927 8.1e-11 72.4 94 34.0
FAN08G2173 Fragaria x ananassa HOM05D002477 ORTHO05D001927 8.1e-11 72.4 156 35.3
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.1e-10 72.0 88 39.8
Eucgr.L02969 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.4e-10 71.6 82 46.3
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 1.4e-10 71.6 105 32.4
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 1.8e-10 71.2 100 43.0
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 1.8e-10 71.2 82 40.2
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 4.0e-10 70.1 126 32.5
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 4.0e-10 70.1 88 39.8
Eucgr.H02945 Eucalyptus grandis HOM05D002477 ORTHO05D001927 5.3e-10 69.7 82 45.1
BcaB01g06386 Brassica carinata HOM05D010589 ORTHO05D001927 6.9e-10 69.3 109 39.4
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 6.9e-10 69.3 138 33.3
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 6.9e-10 69.3 124 34.7
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 2.0e-09 67.8 121 39.7
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 2.0e-09 67.8 71 40.8
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 2.0e-09 67.8 93 32.3
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 2.6e-09 67.4 123 35.0
FvH4_5g11840 Fragaria vesca HOM05D002477 ORTHO05D001927 4.5e-09 66.6 156 34.0
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 4.5e-09 66.6 182 30.8
MD12G1067800 Malus domestica HOM05D002477 ORTHO05D001927 7.6e-09 65.9 97 42.3
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 9.9e-09 65.5 71 42.3
FAN18G0342 Fragaria x ananassa HOM05D002477 ORTHO05D001927 9.9e-09 65.5 156 33.3
FAN18G4344 Fragaria x ananassa HOM05D002477 ORTHO05D001927 9.9e-09 65.5 156 33.3
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 1.3e-08 65.1 117 27.4
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 1.3e-08 65.1 117 27.4
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 1.3e-08 65.1 144 27.1
Os11g0482500 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 1.3e-08 65.1 85 40.0
Os11g0160700 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 2.2e-08 64.3 110 33.6
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 3.8e-08 63.5 330 23.0
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 4.9e-08 63.2 136 34.6
Rhsim04G0031500 Rhododendron simsii HOM05D002477 ORTHO05D001927 4.9e-08 63.2 91 39.6
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 6.4e-08 62.8 144 32.6
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 8.4e-08 62.4 84 41.7
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.4e-07 60.8 80 32.5
Oeu052600.1 Olea europaea HOM05D002477 ORTHO05D001927 2.4e-07 60.8 87 34.5
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 2.4e-07 60.8 219 28.8
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 2.4e-07 60.8 129 27.9
AUR62037152 Chenopodium quinoa HOM05D002477 ORTHO05D001927 5.5e-07 59.7 78 34.6
Sopen07g029480 Solanum pennellii HOM05D002477 ORTHO05D001927 5.5e-07 59.7 85 31.8
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 7.1e-07 59.3 93 32.3
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 7.1e-07 59.3 93 32.3
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 7.1e-07 59.3 71 36.6
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 9.3e-07 58.9 80 36.2
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 1.2e-06 58.5 66 39.4
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 1.2e-06 58.5 71 36.6
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 2.1e-06 57.8 130 33.8
ECA233G6189 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.5e-06 57.0 97 28.9
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 3.5e-06 57.0 77 35.1
Nitab4.5_0007468g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 3.5e-06 57.0 71 32.4
Nitab4.5_0001022g0060 Nicotiana tabacum HOM05D002477 ORTHO05D001927 6.0e-06 56.2 71 31.0
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 6.0e-06 56.2 80 33.8
TWI38G0076 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 6.0e-06 56.2 90 30.0
MSTRG.15028 Avicennia marina HOM05D002477 ORTHO05D001927 7.9e-06 55.8 71 32.4
PGSC0003DMG400031096 Solanum tuberosum HOM05D002477 ORTHO05D001927 7.9e-06 55.8 81 29.6


User provided reference genes

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