Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 0.0e+00 1131.3 646 100.0
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 7.9e-227 790.8 681 63.0
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.1e-223 780.4 669 71.2
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.6e-222 775.8 671 68.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 7.6e-222 774.2 680 63.2
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 4.2e-220 768.5 672 69.5
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 6.7e-210 734.6 643 61.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 9.7e-209 730.7 644 61.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.2e-208 729.6 644 60.9
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 6.9e-207 724.5 672 59.2
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 4.5e-206 721.8 658 59.3
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 8.5e-205 717.6 658 59.0
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 3.7e-192 675.6 666 56.0
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 3.7e-192 675.6 666 56.0
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.7e-189 666.8 660 56.4
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.7e-189 666.8 660 56.4
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 5.8e-145 518.8 299 79.6
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 9.3e-119 431.8 347 57.9
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.6e-118 431.0 364 55.5
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.1e-118 430.6 345 59.1
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.3e-117 427.9 347 58.5
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 2.3e-117 427.2 346 59.5
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 3.0e-117 426.8 348 58.3
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 3.0e-117 426.8 360 56.1
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 8.7e-117 425.2 368 54.6
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.1e-116 424.9 349 56.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.5e-116 424.5 347 57.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.5e-116 424.5 371 54.4
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.5e-116 424.5 371 54.4
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.5e-116 424.5 377 54.4
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 3.3e-116 423.3 346 55.8
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.3e-116 422.9 371 54.2
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.3e-115 421.4 345 56.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.8e-115 420.2 371 53.6
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 2.8e-115 420.2 346 56.1
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 6.2e-115 419.1 377 53.6
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 6.2e-115 419.1 346 56.1
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 6.2e-115 419.1 360 54.2
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.4e-114 417.9 372 53.5
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.8e-114 417.5 349 55.9
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.4e-114 417.2 346 55.8
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.4e-114 417.2 347 57.1
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 3.1e-114 416.8 350 57.1
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 4.0e-114 416.4 348 56.0
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 4.0e-114 416.4 350 57.1
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 5.3e-114 416.0 361 55.7
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 9.0e-114 415.2 347 57.1
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.2e-113 414.8 355 56.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.2e-113 414.8 366 54.1
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.5e-113 414.5 372 53.5
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.0e-113 414.1 347 55.0
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.0e-113 414.1 346 55.8
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.0e-113 414.1 346 56.6
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.0e-113 414.1 349 56.4
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.6e-113 413.7 382 53.7
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.6e-113 413.7 368 53.3
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 3.4e-113 413.3 349 56.2
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 4.5e-113 412.9 364 55.2
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.8e-113 412.5 367 54.5
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 5.8e-113 412.5 349 56.7
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.8e-113 412.5 347 56.2
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.8e-113 412.5 346 56.1
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.8e-113 412.5 368 53.3
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 5.8e-113 412.5 348 55.7
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.8e-113 412.5 347 56.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 7.6e-113 412.1 375 53.3
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.3e-112 411.4 349 56.4
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.3e-112 411.4 348 55.7
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 2.9e-112 410.2 349 56.7
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.9e-112 410.2 388 53.1
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 4.9e-112 409.5 351 55.3
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 4.9e-112 409.5 382 53.1
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.9e-112 409.5 368 53.8
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 8.4e-112 408.7 354 56.2
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 8.4e-112 408.7 347 54.5
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.1e-111 408.3 369 53.9
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.4e-111 407.9 408 49.8
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.9e-111 407.5 351 55.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.9e-111 407.5 351 55.6
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.9e-111 407.5 376 52.4
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 2.5e-111 407.1 347 55.6
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 7.1e-111 405.6 348 55.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.6e-110 404.4 347 53.3
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.6e-110 404.4 349 55.0
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.5e-110 403.3 377 51.5
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 6.0e-110 402.5 347 53.9
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 6.0e-110 402.5 347 55.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.9e-110 402.1 350 54.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 7.9e-110 402.1 347 52.7
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.8e-109 401.0 364 52.2
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.8e-109 401.0 364 52.2
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.8e-109 401.0 367 51.0
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.8e-109 401.0 369 50.7
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 3.0e-109 400.2 347 55.0
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.7e-109 399.1 347 53.9
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.9e-108 397.5 372 51.6
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.3e-108 396.7 347 54.5
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 4.3e-108 396.4 356 53.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 5.7e-108 396.0 347 54.2
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 7.4e-108 395.6 356 53.4
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.6e-107 394.4 347 54.2
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.6e-107 394.4 361 51.2
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 2.8e-107 393.7 349 53.6
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.8e-107 392.9 373 51.2
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 6.3e-107 392.5 368 51.6
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.3e-107 392.5 368 51.4
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 8.2e-107 392.1 354 52.8
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.8e-106 391.0 347 53.3
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.8e-106 391.0 370 49.2
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.2e-105 388.3 364 52.5
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 4.5e-105 386.3 363 50.1
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.9e-105 386.0 349 53.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 7.6e-105 385.6 389 49.6
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.3e-104 384.8 337 53.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.5e-103 380.6 390 48.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 2.5e-103 380.6 433 45.7
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.2e-103 380.2 342 52.0
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 2.7e-102 377.1 351 53.6
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.7e-102 377.1 344 52.9
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.7e-102 377.1 298 58.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 4.6e-102 376.3 347 53.0
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 6.1e-102 375.9 378 46.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 7.9e-102 375.6 374 50.3
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.9e-100 370.9 348 50.6
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 5.7e-100 369.4 353 50.1
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 2.2e-99 367.5 380 47.4
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.8e-98 364.4 347 49.9
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.0e-97 360.9 351 50.4
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 7.7e-97 359.0 348 50.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 9.4e-95 352.1 405 46.7
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.7e-94 350.5 270 59.6
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 6.1e-94 349.4 304 53.3
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 6.1e-94 349.4 400 43.5
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 3.1e-90 337.0 303 53.5
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.6e-89 334.0 268 55.6
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.2e-87 326.6 320 50.9
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.5e-87 326.2 363 44.1
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 7.2e-87 325.9 350 47.1
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 7.9e-86 322.4 308 49.7
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 6.3e-83 312.8 346 46.0
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.6e-81 307.4 325 45.8
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.1e-78 296.2 223 58.7
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 7.5e-76 289.3 363 44.1
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.7e-75 288.1 268 48.9
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 9.1e-74 282.3 297 46.1
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.2e-72 277.7 208 62.0
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 5.0e-72 276.6 245 53.1
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.2e-71 273.5 208 62.0
CARHR192930 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.1e-66 257.3 372 64.2
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.1e-66 256.9 264 45.8
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 9.1e-66 255.8 184 59.8
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 4.0e-61 240.4 248 44.8
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 5.2e-61 240.0 242 44.6
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.9e-43 181.0 138 61.6
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 9.5e-39 166.0 163 50.3
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 4.0e-37 160.6 103 73.8
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 6.8e-37 159.8 130 60.0
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 6.4e-35 153.3 249 34.9
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.1e-31 142.5 104 60.6
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.6e-28 131.3 132 45.5
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.4e-27 126.7 80 73.8
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.2e-22 112.5 129 45.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 2.8e-22 111.3 120 45.8
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.0e-20 105.1 81 53.1
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 5.8e-20 103.6 67 71.6
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.9e-19 101.3 128 43.0
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 8.4e-19 99.8 65 70.8
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 1.1e-13 82.8 139 36.0
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.4e-13 82.4 92 43.5
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.5e-12 79.0 92 38.0
A02p40140 Brassica napus HOM05D003971 ORTHO05D101795 1.9e-07 62.0 126 38.9
A07p30930 Brassica napus HOM05D003971 ORTHO05D097208 1.9e-07 62.0 126 38.9
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 7.4e-07 60.1 61 47.5


User provided reference genes

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