Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 8.6e-190 666.8 324 100.0
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 2.4e-168 595.5 324 88.6
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 3.2e-168 595.1 318 89.9
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 4.2e-168 594.7 321 89.1
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 4.6e-167 591.3 321 88.2
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 1.3e-166 589.7 311 89.4
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 1.7e-166 589.3 321 87.5
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 3.4e-162 575.1 305 89.2
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.7e-161 572.8 318 84.6
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 2.2e-161 572.4 302 89.7
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 2.9e-161 572.0 310 88.4
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 4.9e-161 571.2 318 85.5
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 8.4e-161 570.5 318 84.6
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.9e-160 569.3 310 87.7
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 1.9e-160 569.3 310 87.7
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 4.2e-160 568.2 318 83.6
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 7.1e-160 567.4 318 84.3
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 2.7e-159 565.5 309 87.4
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 7.9e-159 563.9 319 82.8
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 1.0e-158 563.5 320 82.8
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.3e-158 563.1 321 82.2
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 2.3e-158 562.4 318 83.6
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 3.9e-158 561.6 319 83.1
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 5.1e-158 561.2 318 83.0
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 4.3e-157 558.1 321 81.6
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 7.4e-157 557.4 320 81.2
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 1.6e-156 556.2 317 83.3
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.1e-156 555.8 321 82.9
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 4.8e-156 554.7 319 82.8
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 6.2e-156 554.3 302 86.1
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 8.1e-156 553.9 320 80.9
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.1e-155 553.5 315 82.9
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 1.1e-155 553.5 321 81.6
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.4e-155 553.1 318 81.4
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.4e-155 553.1 318 81.4
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 1.4e-155 553.1 324 80.9
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 1.8e-155 552.7 312 83.7
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 3.1e-155 552.0 317 81.7
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 3.1e-155 552.0 308 83.8
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 5.3e-155 551.2 320 81.2
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 2.0e-154 549.3 324 79.3
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 3.4e-154 548.5 323 79.6
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 4.5e-154 548.1 321 79.4
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 5.8e-154 547.7 320 80.9
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 9.9e-154 547.0 317 82.0
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 2.2e-153 545.8 321 81.9
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 3.8e-153 545.0 324 79.0
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.8e-153 545.0 320 79.4
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 4.9e-153 544.7 320 80.0
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 4.9e-153 544.7 313 80.8
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 1.1e-152 543.5 324 79.0
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 1.9e-152 542.7 327 77.4
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.9e-152 542.7 316 81.3
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 1.9e-152 542.7 318 78.9
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 2.5e-152 542.3 322 79.5
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 3.2e-152 542.0 315 78.4
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 4.2e-152 541.6 324 79.0
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 5.5e-152 541.2 299 83.9
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 2.7e-151 538.9 305 81.6
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 2.7e-151 538.9 322 79.2
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 4.6e-151 538.1 318 81.4
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.0e-150 537.0 321 78.2
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 1.8e-150 536.2 321 77.9
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 5.1e-150 534.6 321 79.1
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 1.1e-149 533.5 373 70.2
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 3.3e-149 531.9 315 79.4
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 1.3e-148 530.0 318 78.3
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 1.6e-148 529.6 310 78.7
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 1.6e-148 529.6 301 81.1
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 3.7e-148 528.5 297 83.2
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.8e-148 528.1 302 82.1
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 5.8e-146 521.2 313 77.6
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.3e-145 520.0 299 81.6
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 4.9e-145 518.1 302 79.1
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 6.5e-145 517.7 302 80.8
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 2.1e-143 512.7 298 79.2
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 1.1e-141 506.9 322 74.8
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.3e-141 505.4 316 76.3
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 6.3e-140 501.1 311 77.5
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.1e-139 500.4 308 76.0
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.3e-137 493.4 326 74.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 3.2e-136 488.8 292 77.1
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 3.6e-135 485.3 306 74.5
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 6.1e-135 484.6 316 72.5
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.0e-134 483.8 263 86.7
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.8e-134 483.0 321 69.8
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.5e-133 479.9 287 79.4
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.2e-132 474.2 263 85.6
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.1e-131 473.8 273 82.1
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 4.5e-130 468.4 275 80.0
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.5e-130 468.4 263 85.2
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.0e-129 467.2 319 68.7
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.1e-128 463.8 270 79.6
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.8e-126 456.4 321 70.1
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 2.8e-124 449.1 253 81.4
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 1.4e-123 446.8 311 67.2
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 8.5e-121 437.6 254 80.3
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.2e-119 433.7 305 68.5
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 4.1e-115 418.7 287 66.2
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 1.0e-113 414.1 274 71.9
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 8.5e-113 411.0 305 68.9
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 4.7e-111 405.2 258 76.0
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 4.1e-107 392.1 233 80.3
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.0e-105 387.5 319 58.0
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 9.4e-104 380.9 218 81.7
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.0e-102 377.5 315 58.1
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.4e-94 350.5 228 74.1
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 3.2e-91 339.3 302 54.6
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 1.5e-88 330.5 323 52.0
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 2.3e-78 296.6 296 52.4
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 5.2e-78 295.4 210 65.2
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 8.3e-76 288.1 288 47.2
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 9.2e-75 284.6 173 78.6
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.7e-73 280.4 179 72.6
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.9e-67 260.4 163 74.2
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 2.7e-66 256.5 173 72.8
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 5.1e-65 252.3 146 78.8
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 6.0e-58 228.8 153 72.5
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.3e-57 227.6 191 59.2
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 7.6e-53 211.8 118 82.2
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.3e-52 211.1 182 60.4
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 2.1e-50 203.8 115 80.9
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 1.0e-49 201.4 130 71.5
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 1.5e-45 187.6 108 79.6
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.7e-44 184.1 102 83.3
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 2.7e-42 176.8 158 59.5
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.6e-42 176.0 124 67.7
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 2.5e-40 170.2 118 68.6
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 9.0e-38 161.8 105 71.4
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.9e-32 144.1 324 32.7
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 3.7e-31 139.8 115 64.3
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 2.4e-30 137.1 318 34.3
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.6e-29 133.7 111 60.4
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 1.9e-24 117.5 74 79.7
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.1e-22 111.7 115 53.9
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 2.0e-21 107.5 303 28.7
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 1.0e-20 105.1 69 71.0
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.9e-20 103.6 97 52.6
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 2.9e-20 103.6 69 71.0
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 3.4e-13 80.1 165 28.5
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 5.9e-13 79.3 53 69.8
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 7.7e-13 79.0 294 26.2
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 2.2e-12 77.4 42 88.1
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 2.2e-12 77.4 42 88.1
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.2e-12 77.4 287 25.8
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 2.9e-12 77.0 284 27.5
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 3.2e-11 73.6 42 83.3
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 3.2e-11 73.6 291 24.7
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 4.7e-10 69.7 293 26.6
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 6.1e-10 69.3 307 24.8
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 6.1e-10 69.3 49 63.3
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 3.0e-09 67.0 254 26.8
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 3.0e-09 67.0 218 28.4
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 1.1e-08 65.1 66 56.1
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 2.0e-08 64.3 213 26.8
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.6e-08 63.9 214 28.0
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.6e-08 63.9 213 26.3
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 3.3e-08 63.5 120 34.2
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.3e-07 61.6 213 27.2
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-07 60.8 207 26.6
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.8e-07 60.5 129 32.6
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.7e-07 60.1 204 27.0
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.7e-07 60.1 204 27.0
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.8e-07 59.7 129 32.6
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.8e-07 59.7 129 32.6
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 6.3e-07 59.3 204 27.0
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.3e-07 59.3 129 32.6
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-06 58.5 129 31.8
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-06 58.2 129 32.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-06 58.2 129 32.6
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-06 58.2 129 31.8


User provided reference genes

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