Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 3.4e-71 271.6 137 100.0
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 7.4e-34 147.5 119 63.9
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 2.6e-31 139.0 144 55.6
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 7.7e-31 137.5 139 56.8
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 2.9e-30 135.6 128 58.6
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 7.2e-29 131.0 124 57.3
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 1.4e-27 126.7 112 58.9
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 1.1e-26 123.6 118 55.9
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 2.0e-26 122.9 118 55.9
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 7.4e-26 120.9 118 55.1
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 4.1e-24 115.2 118 51.7
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 7.0e-24 114.4 118 50.8
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 9.1e-24 114.0 115 53.0
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 2.5e-21 105.9 123 49.6
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 1.5e-18 96.7 129 45.7
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 2.6e-18 95.9 113 45.1
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 4.4e-18 95.1 112 47.3
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 5.3e-16 88.2 124 45.2
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 5.3e-16 88.2 103 48.5
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 9.1e-16 87.4 129 43.4
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 1.2e-15 87.0 131 40.5
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 1.6e-15 86.7 66 63.6
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 2.0e-15 86.3 124 43.5
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 7.7e-15 84.3 109 44.0
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 2.2e-14 82.8 141 39.0
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 3.8e-14 82.0 111 45.9
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 6.5e-14 81.3 113 43.4
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 8.5e-14 80.9 127 37.8
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 8.5e-14 80.9 127 37.8
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 1.5e-13 80.1 123 38.2
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.2e-13 79.0 111 44.1
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 4.2e-13 78.6 71 56.3
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 4.2e-13 78.6 111 44.1
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 4.2e-13 78.6 111 44.1
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 4.2e-13 78.6 145 40.0
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 5.5e-13 78.2 115 46.1
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 7.2e-13 77.8 71 53.5
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 9.4e-13 77.4 58 56.9
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.2e-12 77.0 111 44.1
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 2.1e-12 76.3 131 39.7
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 2.7e-12 75.9 127 37.0
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 6.1e-12 74.7 125 41.6
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 3.0e-11 72.4 131 35.1
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 3.0e-11 72.4 120 45.0
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 6.8e-11 71.2 100 46.0
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 8.8e-11 70.9 91 42.9
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 8.8e-11 70.9 116 37.9
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 1.5e-10 70.1 108 39.8
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 1.5e-10 70.1 102 39.2
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 3.4e-10 68.9 112 37.5
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 4.4e-10 68.6 132 34.8
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 4.4e-10 68.6 126 42.9
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 5.7e-10 68.2 124 36.3
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 9.8e-10 67.4 126 41.3
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 9.8e-10 67.4 126 33.3
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 9.8e-10 67.4 126 34.1
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 2.2e-09 66.2 100 44.0
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 4.8e-09 65.1 118 38.1
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 4.8e-09 65.1 108 38.0
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 1.1e-08 63.9 120 35.0
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 1.4e-08 63.5 92 42.4
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 1.4e-08 63.5 122 36.9
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 1.4e-08 63.5 110 40.0
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 1.8e-08 63.2 105 39.0
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 1.8e-08 63.2 118 34.7
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 1.8e-08 63.2 118 34.7
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 1.8e-08 63.2 119 31.9
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 3.1e-08 62.4 117 41.9
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 3.1e-08 62.4 118 34.7
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 5.4e-08 61.6 128 33.6
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 9.1e-08 60.8 127 30.7
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 1.6e-07 60.1 123 30.9
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 2.0e-07 59.7 122 31.1
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 2.0e-07 59.7 125 36.0
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 2.0e-07 59.7 117 30.8
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 2.7e-07 59.3 105 38.1
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 3.5e-07 58.9 113 34.5
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 4.5e-07 58.5 114 32.5
BcaC02g09270 Brassica carinata HOM05D007333 ORTHO05D008874 5.9e-07 58.2 80 51.2
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 5.9e-07 58.2 82 34.1
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 7.7e-07 57.8 58 48.3
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 1.0e-06 57.4 120 36.7
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 1.7e-06 56.6 117 32.5
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 2.3e-06 56.2 96 38.5
C04p40720 Brassica napus HOM05D012099 ORTHO05D008874 2.9e-06 55.8 78 51.3
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 3.8e-06 55.5 109 33.9
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 6.6e-06 54.7 117 39.3
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 8.6e-06 54.3 125 32.8
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 8.6e-06 54.3 84 44.0


User provided reference genes

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