Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.8e-115 418.7 220 100.0
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 3.5e-86 322.0 240 75.4
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 3.5e-86 322.0 240 75.4
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.3e-85 319.3 238 74.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.7e-85 317.8 240 74.6
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 8.7e-85 317.4 240 73.8
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 9.6e-84 313.9 240 73.3
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.8e-83 311.6 238 73.9
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 9.0e-82 307.4 240 71.7
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 9.0e-82 307.4 241 73.4
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 5.8e-81 304.7 240 73.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 6.5e-80 301.2 241 71.8
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 8.4e-80 300.8 241 72.2
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.1e-79 300.4 244 70.9
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 3.5e-78 295.4 245 70.6
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 3.5e-78 295.4 245 70.6
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.3e-77 293.5 244 71.7
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.8e-77 293.1 244 71.7
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.3e-69 266.9 214 66.8
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.5e-68 263.5 240 62.5
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.6e-67 260.0 238 63.0
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.8e-67 259.2 238 61.8
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 6.3e-67 258.1 238 62.2
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 6.3e-67 258.1 240 62.5
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 8.2e-67 257.7 236 63.6
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.1e-66 257.3 238 63.0
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.1e-66 257.3 243 64.2
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.1e-66 257.3 242 62.8
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.4e-66 256.9 239 62.3
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 4.1e-66 255.4 239 62.3
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 9.0e-66 254.2 238 63.0
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 2.0e-65 253.1 237 60.8
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 2.6e-65 252.7 235 63.0
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 2.6e-65 252.7 242 63.2
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.6e-65 252.7 232 65.1
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 3.4e-65 252.3 238 62.2
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 4.5e-65 251.9 237 62.0
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 5.9e-65 251.5 235 62.6
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 5.9e-65 251.5 235 62.6
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.7e-64 250.0 239 60.3
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.7e-64 250.0 241 60.2
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 5.0e-64 248.4 237 59.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 5.0e-64 248.4 237 61.2
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.1e-63 247.3 224 60.7
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.4e-63 246.9 199 65.8
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.4e-63 246.9 238 61.8
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.9e-63 246.5 237 57.4
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.5e-63 246.1 240 61.7
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 3.2e-63 245.7 233 59.7
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.2e-63 245.7 246 60.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 4.2e-63 245.4 239 58.2
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 5.5e-63 245.0 246 58.9
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.5e-63 245.0 245 61.2
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.2e-62 243.8 246 60.2
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.2e-62 243.8 246 60.2
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.6e-62 243.4 240 60.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.6e-62 242.3 240 58.3
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 6.1e-62 241.5 239 59.4
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 7.9e-62 241.1 266 58.3
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 7.9e-62 241.1 242 60.3
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 2.3e-61 239.6 265 55.8
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 3.9e-61 238.8 198 65.7
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 6.7e-61 238.0 242 58.7
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 8.8e-61 237.7 237 57.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.0e-60 236.5 261 57.9
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.6e-60 236.1 243 56.8
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 5.7e-60 235.0 225 60.0
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 9.7e-60 234.2 237 57.8
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 9.7e-60 234.2 266 53.8
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.3e-59 233.8 225 59.6
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 1.7e-59 233.4 202 62.4
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 2.8e-59 232.6 239 56.5
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 3.7e-59 232.3 207 61.8
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 3.7e-59 232.3 238 56.7
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.1e-58 230.7 242 55.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.4e-58 230.3 248 57.7
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.8e-58 229.9 241 57.7
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.4e-58 229.6 277 54.2
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.4e-58 229.6 277 54.2
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.4e-58 229.6 235 58.3
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 4.1e-58 228.8 234 57.3
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.3e-58 228.4 236 55.5
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 5.3e-58 228.4 255 56.9
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 5.3e-58 228.4 266 57.9
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.5e-57 226.9 236 55.1
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.6e-57 226.1 229 58.5
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 3.4e-57 225.7 238 55.9
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.4e-57 225.7 202 62.4
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 4.5e-57 225.3 199 61.8
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 5.9e-57 224.9 248 56.9
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 2.2e-56 223.0 249 57.0
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.9e-56 222.6 197 61.4
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.0e-56 221.9 194 63.9
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.2e-54 217.2 238 56.7
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.6e-54 216.9 218 58.3
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-54 216.9 297 50.5
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.1e-54 216.5 198 64.1
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.1e-54 216.5 242 52.1
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 4.7e-54 215.3 237 52.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 7.9e-54 214.5 204 62.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 7.9e-54 214.5 229 57.6
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.9e-53 212.2 236 55.9
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 8.8e-53 211.1 218 57.3
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 3.3e-52 209.1 220 53.2
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 4.4e-52 208.8 230 55.2
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.8e-51 205.3 193 62.2
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.8e-50 203.4 202 60.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.8e-50 203.4 193 61.7
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.0e-49 199.9 202 53.0
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.6e-49 199.5 193 61.1
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.5e-49 198.7 250 52.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.0e-48 197.6 236 49.2
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.0e-48 197.6 250 52.0
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.0e-48 197.6 250 52.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 1.3e-48 197.2 234 53.4
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.3e-48 197.2 226 51.3
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.2e-48 196.4 228 53.9
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-47 194.1 236 50.0
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-47 194.1 241 49.8
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.1e-46 189.9 189 55.6
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.7e-46 189.5 244 48.8
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 4.7e-46 188.7 218 52.3
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 6.1e-46 188.3 233 51.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.3e-45 186.4 148 68.9
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.3e-45 186.4 218 51.4
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.0e-44 183.3 191 57.1
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 5.7e-44 181.8 188 53.7
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.3e-43 180.6 173 60.1
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.4e-42 177.2 189 55.6
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 4.5e-41 172.2 210 48.1
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 5.9e-41 171.8 105 84.8
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 7.7e-41 171.4 237 48.1
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.5e-39 167.2 216 48.6
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.5e-36 157.1 208 47.1
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 1.3e-35 154.1 161 57.1
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.7e-35 152.5 182 51.1
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.4e-34 150.6 185 48.6
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.4e-34 149.8 196 46.4
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.9e-32 142.9 221 43.9
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 6.5e-32 141.7 96 78.1
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.1e-31 141.0 100 76.0
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 7.2e-31 138.3 115 69.6
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 3.4e-28 129.4 162 45.1
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.2e-27 126.7 228 39.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.1e-26 122.5 181 43.6
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.1e-26 122.5 197 43.7
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.2e-26 121.3 94 63.8
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.5e-23 114.0 205 38.5
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.1e-22 110.2 196 39.8
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 6.4e-19 98.6 72 63.9
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 3.2e-18 96.3 102 50.0
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 5.0e-16 89.0 94 56.4
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 6.6e-16 88.6 95 55.8
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 3.3e-15 86.3 78 59.0
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.4e-12 75.9 131 45.0
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 3.2e-10 69.7 99 42.4
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 7.8e-09 65.1 63 60.3
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 1.5e-07 60.8 81 50.6


User provided reference genes

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