Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 4.2e-165 584.7 313 100.0
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 6.3e-105 384.8 319 66.5
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 1.6e-103 380.2 319 65.8
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 2.0e-98 363.2 275 69.5
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 3.7e-97 359.0 297 66.0
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 1.1e-96 357.5 317 62.5
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 7.0e-96 354.8 316 61.7
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 7.0e-96 354.8 316 61.7
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 1.3e-94 350.5 285 65.6
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 1.3e-94 350.5 285 65.6
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 2.9e-94 349.4 315 64.1
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 2.9e-94 349.4 278 66.2
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 1.2e-92 344.0 267 66.3
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 5.4e-80 302.0 318 56.0
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 3.2e-72 276.2 276 53.6
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 8.6e-70 268.1 272 50.7
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.1e-67 261.2 297 48.5
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 8.9e-67 258.1 300 48.7
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 1.5e-66 257.3 272 51.1
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 1.7e-65 253.8 266 50.0
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 2.2e-65 253.4 318 50.0
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 1.1e-64 251.1 304 46.1
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 1.9e-64 250.4 281 48.4
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 2.1e-63 246.9 274 50.0
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 3.5e-63 246.1 317 43.5
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 4.6e-63 245.7 317 42.6
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 4.6e-63 245.7 288 47.6
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 7.8e-63 245.0 279 48.4
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 1.0e-62 244.6 276 48.6
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 1.3e-62 244.2 288 46.2
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 1.3e-62 244.2 317 43.8
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 2.3e-62 243.4 298 45.3
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 2.3e-62 243.4 291 42.6
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 3.0e-62 243.0 275 48.4
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 3.9e-62 242.7 298 45.6
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 5.1e-62 242.3 273 47.6
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 1.1e-61 241.1 293 42.7
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 1.5e-61 240.7 276 46.4
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.9e-61 240.4 296 45.3
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 1.9e-61 240.4 283 44.5
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 2.5e-61 240.0 310 45.8
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 7.3e-61 238.4 293 46.8
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 9.5e-61 238.0 290 46.2
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 9.5e-61 238.0 293 42.7
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 1.6e-60 237.3 271 45.0
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 2.1e-60 236.9 270 45.6
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 2.8e-60 236.5 287 44.6
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 2.8e-60 236.5 271 45.4
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 2.8e-60 236.5 290 46.2
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 2.8e-60 236.5 282 45.7
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 3.6e-60 236.1 287 43.9
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 3.6e-60 236.1 289 42.6
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 6.2e-60 235.3 289 42.6
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 6.2e-60 235.3 297 44.4
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 6.2e-60 235.3 269 46.5
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 6.2e-60 235.3 269 46.5
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 8.1e-60 235.0 307 44.6
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 1.1e-59 234.6 262 47.3
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 1.4e-59 234.2 270 48.9
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 1.8e-59 233.8 302 44.4
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 5.2e-59 232.3 306 44.4
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 6.8e-59 231.9 268 45.9
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 6.8e-59 231.9 297 46.1
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 6.8e-59 231.9 277 45.1
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 8.9e-59 231.5 297 43.4
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 1.2e-58 231.1 318 43.4
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 1.2e-58 231.1 279 43.7
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 2.0e-58 230.3 298 43.6
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 2.0e-58 230.3 306 43.5
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 2.6e-58 229.9 317 40.1
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 2.6e-58 229.9 262 46.6
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 4.4e-58 229.2 298 43.0
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.9e-57 226.5 263 46.0
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 4.9e-57 225.7 257 44.0
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 1.4e-56 224.2 277 44.4
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 1.4e-56 224.2 264 45.1
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 2.4e-56 223.4 263 46.4
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 3.2e-56 223.0 260 45.8
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 4.2e-56 222.6 261 46.0
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 7.1e-56 221.9 270 44.8
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 1.6e-55 220.7 291 43.6
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 1.0e-54 218.0 260 45.8
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 1.0e-54 218.0 272 44.9
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.9e-54 216.1 276 43.1
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 1.1e-53 214.5 290 43.1
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 1.1e-53 214.5 303 40.9
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 3.3e-53 213.0 287 41.1
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 4.3e-53 212.6 317 43.5
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 5.6e-53 212.2 298 41.3
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.6e-52 210.7 276 42.0
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 2.1e-52 210.3 290 40.0
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 1.1e-51 208.0 279 41.6
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 6.9e-51 205.3 268 44.4
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 1.2e-50 204.5 261 42.5
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 7.6e-50 201.8 263 41.8
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 9.9e-50 201.4 268 43.3
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 1.3e-49 201.1 263 41.8
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 1.7e-49 200.7 261 41.8
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 7.8e-47 191.8 302 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 2.3e-46 190.3 278 37.8
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 5.1e-46 189.1 289 37.7
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 1.9e-45 187.2 215 46.5
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 3.3e-45 186.4 303 38.0
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 3.3e-45 186.4 202 47.0
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 9.6e-45 184.9 317 37.5
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 3.6e-44 183.0 165 52.1
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.1e-43 181.4 221 43.0
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.1e-43 181.4 221 43.0
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 7.6e-42 175.3 288 36.8
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 9.9e-42 174.9 258 39.5
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 2.9e-41 173.3 260 38.1
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 4.9e-41 172.6 248 41.9
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 6.4e-41 172.2 271 40.2
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 3.2e-40 169.9 326 37.7
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 4.6e-39 166.0 264 36.4
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 5.1e-38 162.5 263 39.2
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 2.6e-34 150.2 291 34.7
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 2.6e-34 150.2 163 44.8
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.5e-31 139.8 289 33.6
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 3.3e-29 133.3 163 40.5
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.1e-28 130.6 269 35.3
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 1.4e-27 127.9 241 32.4
BraA05t20057Z Brassica rapa HOM05D005274 ORTHO05D006485 1.2e-23 114.8 89 70.8
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 3.5e-23 113.2 120 47.5
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 7.9e-23 112.1 141 41.8
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.2e-18 98.2 252 28.6
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 3.8e-17 93.2 267 27.0
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 6.1e-15 85.9 137 31.4
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 3.9e-14 83.2 137 30.7
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 3.7e-12 76.6 64 48.4
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 3.1e-11 73.6 109 41.3
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 5.3e-11 72.8 334 24.0
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 3.4e-10 70.1 76 40.8
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 1.7e-09 67.8 120 31.7
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 3.6e-07 60.1 96 40.6
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 7.9e-07 58.9 42 50.0
SEGI_09940 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 1.4e-06 58.2 102 38.2
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 1.8e-06 57.8 42 50.0


User provided reference genes

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