Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 3295.8 1704 100.0
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2898.2 1704 88.1
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2844.7 1705 86.4
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2830.8 1707 86.5
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2822.7 1716 85.7
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2819.3 1706 85.8
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2815.4 1707 85.8
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2812.7 1709 85.5
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2812.3 1707 86.1
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2776.9 1707 84.5
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2575.8 1708 78.7
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2531.9 1711 76.9
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2342.8 1721 70.2
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2305.8 1719 69.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 2296.5 1457 81.3
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2291.9 1717 68.9
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2286.5 1709 69.2
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2271.9 1694 69.1
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2270.4 1692 69.1
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2264.2 1705 68.9
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2254.2 1685 69.0
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2247.6 1704 68.6
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2233.4 1720 67.2
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2232.2 1712 66.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2232.2 1718 67.3
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2231.8 1695 68.1
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2231.4 1705 68.4
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2228.4 1709 67.4
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2225.7 1715 66.9
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2222.2 1718 67.3
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2216.8 1718 67.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2216.4 1724 66.7
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2213.0 1692 67.4
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2212.2 1716 67.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2210.6 1718 67.3
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2204.9 1692 67.5
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2197.2 1709 66.1
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2193.3 1732 66.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2192.5 1708 66.7
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2190.2 1718 66.6
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2189.8 1716 66.8
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2180.6 1701 66.3
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2172.5 1725 64.8
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2168.3 1716 66.2
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2163.3 1718 66.4
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2160.6 1708 65.6
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2157.1 1716 65.2
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2150.2 1708 65.6
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2126.7 1719 64.2
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2124.7 1720 64.3
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2121.7 1709 65.1
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2121.7 1696 65.0
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2112.0 1670 65.6
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2109.3 1719 63.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2104.7 1719 62.9
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2088.5 1721 63.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2088.2 1781 61.8
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2085.8 1745 62.2
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2084.7 1699 63.0
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2083.5 1704 63.6
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2082.8 1696 63.7
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2082.0 1709 63.2
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2081.6 1725 63.6
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2074.7 1770 62.4
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2073.1 1837 61.0
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2067.7 1717 62.8
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2054.3 1697 63.8
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2051.9 1703 63.1
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2046.2 1710 63.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2043.5 1742 62.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2030.8 1783 61.9
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2023.1 1730 62.1
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2014.6 1698 62.4
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2014.2 1414 70.7
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2012.7 1709 61.1
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1996.5 1713 61.6
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1983.8 1676 61.8
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1981.5 1715 61.0
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1951.8 1724 60.2
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1951.4 1650 62.5
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1917.5 1627 62.6
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1883.2 1730 58.0
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1872.1 1713 57.9
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1863.6 1295 69.5
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1862.8 1290 69.5
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1862.0 2133 50.7
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1804.3 1160 74.4
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1802.7 1667 57.5
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1796.6 1751 55.9
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1791.9 1646 58.3
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1723.0 1784 54.9
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1647.5 1645 53.1
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1609.7 1720 49.9
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1604.3 1702 51.2
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1604.0 1720 51.3
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1602.4 1719 54.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1575.5 1679 50.7
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1530.0 1157 72.1
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1525.0 1434 57.3
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1502.6 1045 70.2
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1394.4 937 71.2
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1389.4 1085 61.8
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1318.1 1132 64.1
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1285.4 1094 65.1
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1252.3 1359 52.2
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.0e-310 1070.8 905 59.3
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 8.6e-297 1024.6 927 62.2
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 6.4e-284 981.9 742 64.7
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.6e-271 940.6 616 72.9
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.4e-253 879.4 686 59.8
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 2.1e-242 844.0 600 66.5
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.3e-239 834.7 552 72.5
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.1e-222 776.5 799 56.8
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 3.1e-206 723.8 1567 32.9
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 8.5e-196 689.1 848 42.0
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.2e-184 652.1 430 71.6
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.7e-151 542.0 377 70.3
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 2.9e-151 541.2 597 58.5
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 3.4e-144 517.7 329 74.8
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 6.7e-116 423.7 906 32.3
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 9.3e-110 403.3 621 48.1
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.6e-101 375.9 429 43.1
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.4e-100 372.9 698 34.8
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 4.3e-99 367.9 335 58.8
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 3.1e-97 361.7 240 71.7
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.9e-95 355.1 247 69.6
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 9.7e-91 340.1 530 47.7
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.1e-81 308.1 214 63.6
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 6.3e-74 284.3 393 51.7
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.2e-68 264.6 189 69.3
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.1e-65 255.0 177 65.5
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.8e-60 239.6 176 63.6
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 3.4e-51 208.8 152 63.8
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 5.6e-46 191.4 201 45.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.6e-43 182.6 115 78.3
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 4.4e-43 181.8 130 63.8
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 7.1e-41 174.5 442 37.3
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 4.3e-38 165.2 98 82.7
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 2.1e-37 162.9 129 58.9
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 2.1e-32 146.4 238 44.1
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.0e-31 144.1 206 43.2
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 7.3e-30 137.9 168 45.8
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 9.6e-30 137.5 275 42.2
BcaC01g05783 Brassica carinata HOM05D004072 ORTHO05D095782 1.4e-28 133.7 116 74.1
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 4.4e-27 128.6 123 51.2
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.7e-23 116.7 63 90.5
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.1e-22 114.0 69 73.9
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.9e-22 113.2 92 62.0
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 4.3e-22 112.1 73 75.3
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.3e-21 110.5 87 62.1
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 4.8e-21 108.6 207 36.2
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 3.4e-19 102.4 99 49.5
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.3e-18 100.5 75 70.7
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.2e-17 95.5 60 70.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 3.0e-15 89.4 57 77.2
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 3.3e-14 85.9 287 32.4
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 6.2e-13 81.6 44 77.3
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 8.1e-13 81.3 98 46.9
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 4.0e-12 79.0 84 44.0
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 9.0e-12 77.8 50 76.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 7.6e-11 74.7 52 69.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.3e-10 73.9 51 62.7
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 3.8e-10 72.4 52 59.6
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 3.8e-10 72.4 94 43.6
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 3.2e-09 69.3 73 49.3
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 4.2e-09 68.9 91 45.1
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 9.3e-09 67.8 144 40.3
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 1.6e-08 67.0 166 29.5
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 2.7e-08 66.2 44 72.7
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.0e-07 64.3 32 87.5
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 3.9e-07 62.4 157 31.2
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-06 60.1 104 28.8


User provided reference genes

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