Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.3e-151 539.7 272 100.0
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.1e-112 409.5 272 79.8
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.6e-112 408.3 272 79.4
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.9e-111 405.2 272 78.7
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.5e-110 402.5 272 78.3
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 7.4e-110 401.0 272 77.6
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 9.7e-110 400.6 272 77.2
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 9.7e-110 400.6 272 77.2
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 2.8e-109 399.1 272 76.8
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 4.8e-109 398.3 272 76.8
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.1e-108 397.1 272 76.5
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.4e-108 396.7 272 78.3
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.5e-102 375.9 272 71.7
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 2.9e-98 362.5 272 71.3
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 2.9e-98 362.5 272 71.3
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 6.5e-98 361.3 270 70.0
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.1e-97 360.5 273 71.4
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.5e-97 359.4 270 70.0
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 4.2e-97 358.6 270 70.0
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 5.5e-97 358.2 272 70.6
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 9.4e-97 357.5 270 69.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 9.4e-97 357.5 270 69.6
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.2e-96 357.1 272 69.5
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.1e-96 356.3 270 67.4
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 2.1e-96 356.3 270 69.3
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 6.1e-96 354.8 270 68.9
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 2.3e-95 352.8 266 68.4
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 5.1e-95 351.7 270 68.1
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.1e-94 350.5 266 68.4
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.1e-94 350.5 268 67.2
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 4.4e-94 348.6 270 66.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 5.7e-94 348.2 270 66.3
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 1.7e-93 346.7 270 66.3
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.2e-93 346.3 270 65.2
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.8e-92 343.2 268 67.2
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.4e-92 342.8 268 65.7
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 4.1e-92 342.0 267 65.2
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 5.3e-92 341.7 268 65.7
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 9.1e-92 340.9 305 59.7
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.6e-91 340.1 270 65.6
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.0e-91 339.7 271 64.6
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.0e-90 337.4 267 64.4
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.3e-90 337.0 271 64.9
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 2.2e-90 336.3 265 65.3
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 2.2e-90 336.3 268 63.8
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.9e-90 335.9 267 64.0
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.9e-90 335.9 267 64.0
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 5.0e-90 335.1 268 65.7
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 6.5e-90 334.7 268 65.3
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 6.5e-90 334.7 263 65.4
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 8.5e-90 334.3 268 63.4
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.1e-89 334.0 260 66.9
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.9e-89 333.2 270 64.8
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.5e-89 332.8 272 64.0
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.5e-89 332.8 270 64.4
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 5.5e-89 331.6 270 64.1
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 5.5e-89 331.6 257 65.4
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.2e-88 330.5 263 65.0
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.6e-88 330.1 271 64.2
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.6e-88 330.1 257 65.4
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.1e-88 329.7 264 63.6
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.7e-88 329.3 268 64.6
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 2.7e-88 329.3 265 64.2
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.7e-88 329.3 264 63.6
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.7e-88 329.3 265 63.4
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 2.7e-88 329.3 268 64.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 3.6e-88 328.9 273 63.7
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.6e-88 328.9 270 63.3
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 3.6e-88 328.9 268 63.8
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 3.6e-88 328.9 259 66.4
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 4.7e-88 328.6 271 62.4
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 4.7e-88 328.6 269 62.8
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 8.0e-88 327.8 265 63.0
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.8e-87 326.6 257 65.0
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.8e-87 326.6 267 63.7
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 2.3e-87 326.2 269 62.8
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 3.0e-87 325.9 271 62.7
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 3.0e-87 325.9 268 63.4
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 4.0e-87 325.5 267 61.4
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 5.2e-87 325.1 265 63.8
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 5.2e-87 325.1 268 61.9
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 3.3e-86 322.4 265 63.4
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 3.3e-86 322.4 263 63.5
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 4.4e-86 322.0 256 64.1
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 5.7e-86 321.6 267 60.7
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.3e-85 320.5 270 62.2
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 1.7e-85 320.1 270 62.2
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 2.8e-85 319.3 269 62.1
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 2.8e-85 319.3 268 62.3
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 6.3e-85 318.2 259 63.3
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.8e-84 316.6 270 62.2
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.8e-84 316.6 270 61.9
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.2e-83 313.9 267 60.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.0e-83 313.2 262 61.1
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.7e-83 312.8 264 62.9
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 2.9e-82 309.3 210 72.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 5.0e-82 308.5 314 54.8
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 3.2e-81 305.8 274 58.4
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 4.7e-80 302.0 254 61.4
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.0e-79 300.8 268 59.7
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.0e-79 300.8 261 61.3
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.4e-79 300.4 270 59.6
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.4e-79 300.4 274 57.3
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.4e-76 290.4 267 58.8
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 4.1e-76 288.9 271 55.7
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.2e-72 277.3 260 56.5
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.1e-72 276.6 258 57.0
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.7e-72 275.4 204 67.2
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.0e-71 274.2 271 54.2
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.3e-71 273.1 260 55.4
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 4.0e-71 272.3 257 55.6
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.2e-70 270.8 266 55.3
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 3.7e-69 265.8 262 55.3
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 8.3e-69 264.6 267 53.9
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.1e-64 250.0 228 57.0
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 7.3e-57 224.9 271 47.6
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.9e-53 213.0 192 59.9
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.2e-52 209.5 115 91.3
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.9e-50 202.6 279 41.6
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.3e-49 199.5 151 67.5
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 5.6e-49 198.7 179 59.8
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.6e-49 198.7 149 67.1
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 3.4e-46 189.5 145 66.9
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.6e-43 179.1 144 66.0
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 7.8e-43 178.3 178 54.5
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 2.3e-42 176.8 176 54.5
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 6.8e-39 165.2 146 58.2
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.4e-38 162.9 91 86.8
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.1e-36 157.9 152 57.9
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.1e-34 149.1 117 64.1
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.7e-32 142.5 93 74.2
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.1e-31 139.8 114 63.2
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 4.9e-29 132.5 78 80.8
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 4.9e-29 132.5 187 40.1
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 7.8e-27 125.2 252 34.5
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.8e-24 116.7 253 30.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.8e-23 114.0 257 30.7
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.4e-23 113.6 247 33.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.1e-23 113.2 252 31.0
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.2e-22 111.3 71 73.2
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.2e-22 111.3 119 49.6
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 3.4e-22 109.8 118 55.1
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 3.8e-21 106.3 71 76.1
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 6.4e-21 105.5 243 29.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 9.3e-20 101.7 191 34.6
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 2.1e-19 100.5 256 29.3
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.5e-19 99.8 69 68.1
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 2.3e-18 97.1 79 62.0
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 3.9e-18 96.3 60 75.0
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.3e-17 93.2 207 32.4
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.6e-16 90.9 46 89.1
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 2.8e-16 90.1 96 49.0
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.8e-16 90.1 60 65.0
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 4.8e-16 89.4 117 48.7
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 8.1e-16 88.6 117 47.9
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 1.1e-15 88.2 59 72.9
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.1e-15 86.7 212 28.8
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 1.5e-14 84.3 53 77.4
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 1.4e-12 77.8 95 46.3
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.2e-11 74.7 81 50.6
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 1.2e-11 74.7 67 53.7
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 1.6e-11 74.3 62 56.5
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 3.5e-11 73.2 65 52.3
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 6.0e-11 72.4 64 53.1
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.3e-10 70.5 59 55.9
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 4.8e-08 62.8 46 63.0
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 6.2e-08 62.4 57 52.6
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 1.2e-06 58.2 60 48.3


User provided reference genes

Program Settings