Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 2.3e-249 865.1 443 100.0
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 9.8e-144 514.2 455 62.9
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 1.9e-139 500.0 448 62.1
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 5.2e-137 491.9 451 61.2
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 2.8e-135 486.1 447 60.2
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 7.8e-133 478.0 455 59.8
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 1.3e-132 477.2 449 60.4
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 5.0e-132 475.3 467 58.0
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 1.6e-130 470.3 458 60.5
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 8.9e-129 464.5 458 60.3
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 5.8e-128 461.8 478 58.2
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 5.8e-128 461.8 478 58.2
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 7.8e-125 451.4 487 56.9
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 8.5e-63 245.4 449 38.5
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 3.9e-60 236.5 451 39.5
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 3.9e-60 236.5 455 39.3
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 6.7e-60 235.7 449 39.2
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 4.3e-59 233.0 453 41.1
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 5.9e-56 222.6 464 35.8
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 1.3e-55 221.5 470 34.9
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 8.5e-55 218.8 460 36.5
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 1.4e-54 218.0 499 36.3
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 2.5e-54 217.2 466 35.8
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 2.5e-54 217.2 460 37.6
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 2.7e-53 213.8 461 35.8
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 1.4e-52 211.5 454 37.2
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 3.0e-52 210.3 456 37.1
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 5.1e-52 209.5 375 38.1
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 6.7e-52 209.1 473 37.6
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 8.8e-52 208.8 475 34.5
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 2.6e-51 207.2 454 36.3
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 5.7e-51 206.1 449 35.4
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 2.2e-50 204.1 474 33.8
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 6.3e-50 202.6 477 34.2
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 6.3e-50 202.6 452 33.0
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 1.1e-49 201.8 462 34.8
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 1.4e-49 201.4 441 35.1
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 1.8e-49 201.1 474 34.6
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 2.4e-49 200.7 445 34.6
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 3.1e-49 200.3 447 36.9
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 3.1e-49 200.3 468 32.9
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 5.3e-49 199.5 458 35.2
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 5.9e-48 196.1 456 33.8
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 2.9e-47 193.7 471 32.5
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 1.1e-46 191.8 450 35.1
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 1.9e-46 191.0 390 37.2
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 3.2e-46 190.3 461 31.2
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 3.2e-46 190.3 464 33.0
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 5.5e-46 189.5 462 34.8
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 9.4e-46 188.7 442 35.5
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 3.6e-45 186.8 442 30.5
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 4.7e-45 186.4 453 32.2
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 6.1e-45 186.0 438 36.1
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 5.2e-44 183.0 467 33.8
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 6.7e-44 182.6 449 33.4
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 1.5e-43 181.4 459 33.6
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 2.0e-43 181.0 373 39.1
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 5.7e-43 179.5 448 30.6
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 1.7e-42 177.9 296 39.2
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 6.3e-42 176.0 258 43.4
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 1.1e-41 175.3 296 38.2
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 1.8e-41 174.5 458 33.6
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.8e-41 174.5 458 33.6
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 1.2e-40 171.8 464 31.2
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 1.2e-40 171.8 409 33.3
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 2.6e-40 170.6 297 40.1
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 4.5e-40 169.9 452 31.4
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 1.7e-39 167.9 279 39.4
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 1.9e-38 164.5 454 31.1
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 5.5e-38 162.9 463 32.6
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 1.6e-37 161.4 462 32.5
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 4.7e-37 159.8 390 33.6
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 1.0e-36 158.7 463 32.8
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 1.8e-36 157.9 462 29.4
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 6.8e-36 156.0 446 33.6
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.6e-35 154.1 455 32.3
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 3.4e-35 153.7 462 29.4
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 4.4e-35 153.3 443 31.6
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 9.8e-35 152.1 469 33.5
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 6.3e-34 149.4 269 37.5
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 2.2e-31 141.0 223 40.4
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 1.6e-29 134.8 236 40.7
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 2.1e-29 134.4 162 48.8
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 2.0e-27 127.9 223 37.2
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 4.4e-27 126.7 252 34.1
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 6.3e-26 122.9 250 35.6
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 9.1e-25 119.0 199 37.2
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 1.2e-24 118.6 458 26.9
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 1.3e-23 115.2 172 38.4
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 2.9e-23 114.0 178 41.0
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 3.8e-23 113.6 174 37.9
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 2.8e-21 107.5 346 31.8
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 1.0e-20 105.5 163 38.0
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 5.7e-19 99.8 230 36.1
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 2.9e-18 97.4 79 57.0
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 3.7e-18 97.1 249 31.7
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 5.4e-17 93.2 382 28.0
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 6.6e-15 86.3 239 33.9
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 1.5e-14 85.1 57 70.2
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 3.3e-14 84.0 148 35.1
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 1.2e-13 82.0 170 32.4
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 1.2e-13 82.0 170 32.4
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.0e-11 74.7 129 38.8
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 1.4e-09 68.6 56 58.9
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 1.9e-09 68.2 67 47.8
VMungo0251G2390 Vigna mungo HOM05D007068 ORTHO05D008590 7.3e-06 56.2 102 34.3


User provided reference genes

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