Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G4880 Aethionema arabicum HOM05D002253 ORTHO05D026455 4.3e-110 401.4 206 100.0
Sp1g35970 Schrenkiella parvula HOM05D002253 ORTHO05D026455 7.7e-35 151.4 214 48.6
AL1G55950 Arabidopsis lyrata HOM05D002253 ORTHO05D026455 1.5e-30 137.1 195 50.8
THA.LOC104821884 Tarenaya hassleriana HOM05D002253 ORTHO05D026455 8.0e-24 114.8 220 41.8
RcHm_v2.0_Chr7g0185281 Rosa chinensis HOM05D002253 ORTHO05D002351 5.8e-14 82.0 207 38.6
Nitab4.5_0010492g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 1.7e-13 80.5 181 37.6
Glyma.08G040800 Glycine max HOM05D002253 ORTHO05D002351 4.9e-13 79.0 217 35.9
Duzib084G0173 Durio zibethinus HOM05D002253 ORTHO05D002351 1.1e-12 77.8 162 37.0
Gohir.A11G005700 Gossypium hirsutum HOM05D002253 ORTHO05D002351 1.4e-12 77.4 166 38.0
Manes.05G137800 Manihot esculenta HOM05D002253 ORTHO05D002351 1.4e-12 77.4 165 37.0
Nitab4.5_0017241g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 1.4e-12 77.4 181 37.0
arahy.Tifrunner.gnm1.ann1.AI2V23 Arachis hypogaea HOM05D002253 ORTHO05D002351 1.9e-12 77.0 224 35.3
COL.COLO4_04673 Corchorus olitorius HOM05D002253 ORTHO05D002351 1.9e-12 77.0 162 37.7
CAN.G438.133 Capsicum annuum HOM05D002253 ORTHO05D002351 3.2e-12 76.3 240 33.3
Gohir.D09G172900 Gossypium hirsutum HOM05D002253 ORTHO05D002351 3.2e-12 76.3 183 35.5
Thecc.03G033900 Theobroma cacao HOM05D002253 ORTHO05D002351 3.2e-12 76.3 234 32.1
Gorai.006G194800 Gossypium raimondii HOM05D002253 ORTHO05D002351 4.1e-12 75.9 183 35.0
Atru.chr9.822 Acer truncatum HOM05D002253 ORTHO05D002351 5.4e-12 75.5 220 34.1
Glyma.05G233500 Glycine max HOM05D002253 ORTHO05D002351 5.4e-12 75.5 155 38.7
Peaxi162Scf00015g00812 Petunia axillaris HOM05D002253 ORTHO05D002351 1.2e-11 74.3 233 31.8
FAN08G0576 Fragaria x ananassa HOM05D002253 ORTHO05D002351 1.6e-11 73.9 249 33.7
Gohir.D11G004801 Gossypium hirsutum HOM05D002253 ORTHO05D002351 1.6e-11 73.9 237 32.9
Gorai.007G006000 Gossypium raimondii HOM05D002253 ORTHO05D002351 1.6e-11 73.9 237 32.9
Manes.01G012400 Manihot esculenta HOM05D002253 ORTHO05D002351 3.5e-11 72.8 163 36.8
FAN18G0057 Fragaria x ananassa HOM05D002253 ORTHO05D002351 7.8e-11 71.6 252 35.3
FvH4_5g12280 Fragaria vesca HOM05D002253 ORTHO05D002351 1.0e-10 71.2 252 34.1
FAN18G1637 Fragaria x ananassa HOM05D002253 ORTHO05D002351 1.0e-10 71.2 252 34.1
PGR044G1243 Punica granatum HOM05D002253 ORTHO05D002351 1.0e-10 71.2 222 34.2
TAR629G0720 Trochodendron aralioides HOM05D002253 ORTHO05D002351 1.0e-10 71.2 142 36.6
Cfa019788 Carpinus fangiana HOM05D002253 ORTHO05D002351 1.7e-10 70.5 158 36.7
Duzib205G1666 Durio zibethinus HOM05D002253 ORTHO05D002351 1.7e-10 70.5 162 34.6
Lalb_Chr05g0222551 Lupinus albus HOM05D002253 ORTHO05D002351 1.7e-10 70.5 230 33.9
Haze_18660 Corylus avellana HOM05D002253 ORTHO05D002351 3.0e-10 69.7 160 35.0
QL10p025078 Quercus lobata HOM05D002253 ORTHO05D002351 3.9e-10 69.3 237 33.3
FAN13G2702 Fragaria x ananassa HOM05D002253 ORTHO05D002351 5.0e-10 68.9 248 32.7
Gohir.A09G177400 Gossypium hirsutum HOM05D002253 ORTHO05D002351 5.0e-10 68.9 180 32.8
Carub.0001s1308 Capsella rubella HOM05D002253 ORTHO05D002351 6.6e-10 68.6 159 35.8
FAN04G1468 Fragaria x ananassa HOM05D002253 ORTHO05D002351 8.6e-10 68.2 250 31.6
Psat1g038160 Pisum sativum HOM05D002253 ORTHO05D002351 8.6e-10 68.2 233 29.6
TWI79G0250 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 8.6e-10 68.2 147 39.5
Nitab4.5_0004895g0030 Nicotiana tabacum HOM05D002253 ORTHO05D002351 2.5e-09 66.6 149 36.9
Potri.015G054300 Populus trichocarpa HOM05D002253 ORTHO05D002351 2.5e-09 66.6 172 37.8
Ciclev10022179m.g Citrus clementina HOM05D002253 ORTHO05D002351 3.3e-09 66.2 193 35.2
Cc00_g12390 Coffea canephora HOM05D002253 ORTHO05D002351 3.3e-09 66.2 161 35.4
Gorai.008G286400 Gossypium raimondii HOM05D002253 ORTHO05D002351 3.3e-09 66.2 161 36.0
Sopen03g038440 Solanum pennellii HOM05D002253 ORTHO05D002351 3.3e-09 66.2 230 31.3
Nn3g17816 Nelumbo nucifera HOM05D002253 ORTHO05D002351 4.3e-09 65.9 166 36.1
Solyc06g069150.1 Solanum lycopersicum HOM05D002253 ORTHO05D002351 4.3e-09 65.9 238 31.5
TAR371G1148 Trochodendron aralioides HOM05D002253 ORTHO05D002351 4.3e-09 65.9 166 36.1
Ca_25451_v3 Cicer arietinum L. HOM05D002253 ORTHO05D002351 5.6e-09 65.5 230 33.5
Gohir.D12G266500 Gossypium hirsutum HOM05D002253 ORTHO05D002351 5.6e-09 65.5 160 35.6
Oeu014307.1 Olea europaea HOM05D002253 ORTHO05D002351 5.6e-09 65.5 156 36.5
Ca_25500_v3 Cicer arietinum L. HOM05D002253 ORTHO05D002351 7.3e-09 65.1 232 30.6
Lalb_Chr16g0387911 Lupinus albus HOM05D002253 ORTHO05D002351 7.3e-09 65.1 220 34.5
PGSC0003DMG400005716 Solanum tuberosum HOM05D002253 ORTHO05D002351 7.3e-09 65.1 246 30.5
Actinidia14884 Actinidia chinensis HOM05D002253 ORTHO05D002351 9.5e-09 64.7 153 36.6
Manes.06G069300 Manihot esculenta HOM05D002253 ORTHO05D002351 9.5e-09 64.7 143 37.1
MELO3C012239.2 Cucumis melo HOM05D002253 ORTHO05D002351 1.2e-08 64.3 177 32.8
CsaV3_5G034240 Cucumis sativus L. HOM05D002253 ORTHO05D002351 1.2e-08 64.3 177 32.2
Duzib268G0137 Durio zibethinus HOM05D002253 ORTHO05D002351 1.2e-08 64.3 180 32.8
MBI10_g16026_MAGBIO Magnolia biondii HOM05D002253 ORTHO05D002351 1.6e-08 63.9 161 34.8
Thhalv10008809m.g Eutrema salsugineum HOM05D002253 ORTHO05D002351 2.1e-08 63.5 156 35.3
VMungo0251G2449 Vigna mungo HOM05D002253 ORTHO05D002351 2.1e-08 63.5 204 32.4
Actinidia16646 Actinidia chinensis HOM05D002253 ORTHO05D002351 2.8e-08 63.2 150 38.0
Ciclev10032842m.g Citrus clementina HOM05D002253 ORTHO05D002351 2.8e-08 63.2 176 34.1
Cpa.g.sc448.1 Carica papaya HOM05D002253 ORTHO05D002351 3.6e-08 62.8 173 31.2
CiPaw.15G129600 Carya illinoinensis HOM05D002253 ORTHO05D002351 3.6e-08 62.8 209 35.9
Lsat_1_v5_gn_4_18360 Lactuca sativa HOM05D002253 ORTHO05D002351 3.6e-08 62.8 124 37.9
MD14G1226200 Malus domestica HOM05D002253 ORTHO05D002351 3.6e-08 62.8 252 34.1
Nitab4.5_0011024g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 3.6e-08 62.8 148 35.8
SalBow8G5368 Salvia bowleyana HOM05D002253 ORTHO05D002351 3.6e-08 62.8 124 39.5
Solyc03g119610.1 Solanum lycopersicum HOM05D002253 ORTHO05D002351 3.6e-08 62.8 241 31.1
Nitab4.5_0000208g0200 Nicotiana tabacum HOM05D002253 ORTHO05D002351 4.7e-08 62.4 168 33.3
Duzib248G1226 Durio zibethinus HOM05D002253 ORTHO05D002351 6.2e-08 62.0 176 32.4
Migut.E00330 Erythranthe guttata HOM05D002253 ORTHO05D002351 6.2e-08 62.0 148 37.8
Sopen06g026430 Solanum pennellii HOM05D002253 ORTHO05D002351 6.2e-08 62.0 203 32.5
PGSC0003DMG400028789 Solanum tuberosum HOM05D002253 ORTHO05D002351 6.2e-08 62.0 239 32.6
CSS0015690 Camellia sinensis var. sinensis HOM05D002253 ORTHO05D002351 8.1e-08 61.6 183 30.6
ClCG05G022790 Citrullus lanatus HOM05D002253 ORTHO05D002351 8.1e-08 61.6 182 34.6
Haze_17470 Corylus avellana HOM05D002253 ORTHO05D002351 8.1e-08 61.6 156 33.3
DCAR_011350 Daucus carota HOM05D002253 ORTHO05D002351 8.1e-08 61.6 149 32.9
Sp1g11860 Schrenkiella parvula HOM05D002253 ORTHO05D002351 8.1e-08 61.6 152 34.2
TWI75G0443 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 8.1e-08 61.6 144 38.2
Phvul.002G315700 Phaseolus vulgaris HOM05D002253 ORTHO05D002351 1.1e-07 61.2 207 33.3
MSTRG.2245 Avicennia marina HOM05D002253 ORTHO05D002351 1.4e-07 60.8 138 34.1
CSS0050023 Camellia sinensis var. sinensis HOM05D002253 ORTHO05D002351 1.4e-07 60.8 183 30.6
Duzib068G0367 Durio zibethinus HOM05D002253 ORTHO05D002351 1.4e-07 60.8 237 32.9
Glyma.07G090800 Glycine max HOM05D002253 ORTHO05D002351 1.4e-07 60.8 155 32.9
Peaxi162Scf00382g00023 Petunia axillaris HOM05D002253 ORTHO05D002351 1.4e-07 60.8 108 38.9
Sed0022428 Sechium edule HOM05D002253 ORTHO05D002351 1.4e-07 60.8 152 38.8
SGA_v2.0_scaffold170G38753 Striga asiatica HOM05D002253 ORTHO05D002351 1.4e-07 60.8 107 37.4
COL.COLO4_07913 Corchorus olitorius HOM05D002253 ORTHO05D002351 1.8e-07 60.5 183 31.7
Gorai.013G076400 Gossypium raimondii HOM05D002253 ORTHO05D002351 1.8e-07 60.5 158 31.0
GSVIVG01011906001 Vitis vinifera HOM05D002253 ORTHO05D002351 1.8e-07 60.5 172 34.3
ClCG04G011180 Citrullus lanatus HOM05D002253 ORTHO05D002351 2.3e-07 60.1 238 31.5
MD06G1215300 Malus domestica HOM05D002253 ORTHO05D002351 2.3e-07 60.1 184 36.4
PGSC0003DMG400012967 Solanum tuberosum HOM05D002253 ORTHO05D002351 2.3e-07 60.1 145 37.2
MELO3C002083.2 Cucumis melo HOM05D002253 ORTHO05D002351 3.1e-07 59.7 183 32.2
QL01p043511 Quercus lobata HOM05D002253 ORTHO05D002351 3.1e-07 59.7 170 31.2
TPR.G35240 Trifolium pratense HOM05D002253 ORTHO05D002351 3.1e-07 59.7 225 28.9
TWI31G0181 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 3.1e-07 59.7 147 35.4
AT1G13360 Arabidopsis thaliana HOM05D002253 ORTHO05D002351 4.0e-07 59.3 150 33.3
Cc04_g07200 Coffea canephora HOM05D002253 ORTHO05D002351 4.0e-07 59.3 242 31.8
Eucgr.K02217 Eucalyptus grandis HOM05D002253 ORTHO05D002351 4.0e-07 59.3 85 50.6
HanXRQChr08g0214131 Helianthus annuus HOM05D002253 ORTHO05D002351 4.0e-07 59.3 166 34.9
Thecc.02G356300 Theobroma cacao HOM05D002253 ORTHO05D002351 4.0e-07 59.3 186 30.6
BcaC07g38689 Brassica carinata HOM05D002253 ORTHO05D002351 5.2e-07 58.9 152 32.9
C08p16090 Brassica napus HOM05D002253 ORTHO05D002351 5.2e-07 58.9 152 32.9
BolC8t49232H Brassica oleracea HOM05D002253 ORTHO05D002351 5.2e-07 58.9 152 32.9
CSS0003643 Camellia sinensis var. sinensis HOM05D002253 ORTHO05D002351 5.2e-07 58.9 137 37.2
Nn4g23814 Nelumbo nucifera HOM05D002253 ORTHO05D002351 5.2e-07 58.9 173 33.5
Phvul.004G158400 Phaseolus vulgaris HOM05D002253 ORTHO05D002351 5.2e-07 58.9 199 29.6
Sed0025092 Sechium edule HOM05D002253 ORTHO05D002351 5.2e-07 58.9 123 43.1
A08p32340 Brassica napus HOM05D002253 ORTHO05D002351 6.8e-07 58.5 149 34.2
BraA08t35157Z Brassica rapa HOM05D002253 ORTHO05D002351 6.8e-07 58.5 149 34.2
CANSAT01G2454 Cannabis sativa HOM05D002253 ORTHO05D002351 8.9e-07 58.2 177 33.3
Dinv09805 Davidia involucrata HOM05D002253 ORTHO05D002351 8.9e-07 58.2 213 28.6
Gohir.A13G054900 Gossypium hirsutum HOM05D002253 ORTHO05D002351 8.9e-07 58.2 158 30.4
Lj2g0015775 Lotus japonicus HOM05D002253 ORTHO05D002351 8.9e-07 58.2 183 31.7
Oeu008049.1 Olea europaea HOM05D002253 ORTHO05D002351 8.9e-07 58.2 118 37.3
Hma1.2p1_1001F.1_g246520 Hydrangea macrophylla HOM05D002253 ORTHO05D002351 1.2e-06 57.8 157 31.2
Cfa018604 Carpinus fangiana HOM05D002253 ORTHO05D002351 1.5e-06 57.4 158 32.9
CiPaw.16G064200 Carya illinoinensis HOM05D002253 ORTHO05D002351 1.5e-06 57.4 154 33.8
Sabra10G0095700 Salix brachista HOM05D002253 ORTHO05D002351 1.5e-06 57.4 163 35.0
VMungo0464G1075 Vigna mungo HOM05D002253 ORTHO05D002351 1.5e-06 57.4 212 27.8
C05p09930 Brassica napus HOM05D002253 ORTHO05D002351 2.0e-06 57.0 183 30.6
HanXRQChr12g0364641 Helianthus annuus HOM05D002253 ORTHO05D002351 2.0e-06 57.0 178 34.3
MBI16_g16414_MAGBIO Magnolia biondii HOM05D002253 ORTHO05D002351 2.0e-06 57.0 129 34.1
Manes.14G101400 Manihot esculenta HOM05D002253 ORTHO05D002351 2.0e-06 57.0 140 34.3
Medtr1g111060 Medicago truncatula HOM05D002253 ORTHO05D002351 2.0e-06 57.0 139 34.5
Sabra08G0090800 Salix brachista HOM05D002253 ORTHO05D002351 2.0e-06 57.0 149 34.9
BolC5t29733H Brassica oleracea HOM05D002253 ORTHO05D002351 2.6e-06 56.6 183 30.1
CARHR013740 Cardamine hirsuta HOM05D002253 ORTHO05D002351 2.6e-06 56.6 235 28.9
ECA233G6013 Erigeron canadensis HOM05D002253 ORTHO05D002351 2.6e-06 56.6 150 29.3
Medtr8g104140 Medicago truncatula HOM05D002253 ORTHO05D002351 2.6e-06 56.6 176 35.8
Psat6g228840 Pisum sativum HOM05D002253 ORTHO05D002351 2.6e-06 56.6 152 31.6
Rhsim12G0083100 Rhododendron simsii HOM05D002253 ORTHO05D002351 2.6e-06 56.6 161 36.0
Sabra15G0075100 Salix brachista HOM05D002253 ORTHO05D002351 2.6e-06 56.6 181 32.0
CsaV3_1G006570 Cucumis sativus L. HOM05D002253 ORTHO05D002351 3.4e-06 56.2 199 32.2
Potri.010G126000 Populus trichocarpa HOM05D002253 ORTHO05D002351 3.4e-06 56.2 112 40.2
Dinv21099 Davidia involucrata HOM05D002253 ORTHO05D002351 4.4e-06 55.8 165 35.2
TWI81G0977 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 4.4e-06 55.8 141 34.0
Duzib251G0566 Durio zibethinus HOM05D002253 ORTHO05D002351 5.8e-06 55.5 176 30.1
Lj4g0014578 Lotus japonicus HOM05D002253 ORTHO05D002351 5.8e-06 55.5 100 42.0
SalBow8G3108 Salvia bowleyana HOM05D002253 ORTHO05D002351 5.8e-06 55.5 193 31.6
SalBow8G4143 Salvia bowleyana HOM05D002253 ORTHO05D002351 5.8e-06 55.5 193 31.6
Gohir.D13G067100 Gossypium hirsutum HOM05D002253 ORTHO05D002351 7.5e-06 55.1 158 29.7
VMungo0720G1033 Vigna mungo HOM05D002253 ORTHO05D002351 7.5e-06 55.1 161 32.9
Aqoxy3G00318 Aquilegia oxysepala HOM05D002253 ORTHO05D002351 9.9e-06 54.7 159 36.5
BcaB03g13144 Brassica carinata HOM05D002253 ORTHO05D002351 9.9e-06 54.7 153 32.7
CiPaw.15G084000 Carya illinoinensis HOM05D002253 ORTHO05D002351 9.9e-06 54.7 158 31.6
Lalb_Chr22g0353031 Lupinus albus HOM05D002253 ORTHO05D002351 9.9e-06 54.7 216 29.6
Peaxi162Scf00013g00912 Petunia axillaris HOM05D002253 ORTHO05D002351 9.9e-06 54.7 146 32.9
Psat7g012840 Pisum sativum HOM05D002253 ORTHO05D002351 9.9e-06 54.7 231 28.1
PGR083G0350 Punica granatum HOM05D002253 ORTHO05D002351 9.9e-06 54.7 204 28.4
Rhsim09G0108900 Rhododendron simsii HOM05D002253 ORTHO05D002351 9.9e-06 54.7 140 37.1
Sc04g0006530 Simmondsia chinensis HOM05D002253 ORTHO05D002351 9.9e-06 54.7 146 36.3


User provided reference genes

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