Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 0.0e+00 1228.0 807 100.0
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 2.6e-195 686.4 888 62.3
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 1.5e-190 670.6 880 62.5
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.4e-188 664.1 865 63.1
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 1.0e-186 657.9 888 58.7
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 6.5e-186 655.2 880 60.2
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 1.4e-185 654.1 866 63.0
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 4.8e-181 639.0 865 62.2
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 7.2e-177 625.2 866 61.8
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 1.2e-176 624.4 832 63.1
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 6.9e-172 608.6 862 60.6
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 1.7e-170 604.0 863 60.3
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 9.5e-137 491.9 896 49.9
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 3.7e-117 426.8 816 45.8
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 1.9e-116 424.5 945 41.3
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 3.2e-116 423.7 956 39.5
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 1.6e-115 421.4 567 49.9
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 4.6e-115 419.9 885 42.0
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.7e-114 417.9 515 53.2
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 5.1e-114 416.4 511 52.6
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 3.3e-113 413.7 516 52.3
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.3e-111 407.5 810 41.9
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 8.9e-111 405.6 795 41.3
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.5e-110 404.8 820 40.7
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.6e-110 404.1 810 45.9
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 4.4e-110 403.3 810 45.9
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.3e-109 401.7 904 39.6
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 4.9e-109 399.8 803 45.6
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.1e-108 398.7 768 45.7
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.2e-108 397.1 656 47.1
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 7.8e-107 392.5 803 44.1
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 7.8e-107 392.5 797 40.9
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.3e-106 391.7 467 54.6
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.3e-106 391.7 514 50.0
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 3.0e-106 390.6 861 39.6
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.3e-105 386.7 493 50.9
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.8e-104 384.0 490 50.4
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.4e-103 380.9 792 40.8
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.4e-103 380.9 675 42.5
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 8.9e-103 379.0 794 41.6
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 1.2e-102 378.6 759 44.1
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 5.8e-102 376.3 534 48.1
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 7.6e-102 375.9 503 49.3
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 3.8e-101 373.6 505 48.7
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 8.4e-101 372.5 529 48.8
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.1e-100 372.1 514 48.8
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 4.2e-100 370.2 454 52.4
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 4.2e-100 370.2 762 43.8
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 1.2e-99 368.6 514 48.8
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 2.1e-99 367.9 521 47.8
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 3.5e-99 367.1 869 38.4
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 1.7e-98 364.8 759 46.0
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 2.3e-98 364.4 442 53.6
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 3.9e-98 363.6 834 40.5
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.1e-98 363.2 658 42.2
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 8.7e-98 362.5 709 43.0
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.1e-97 362.1 435 53.3
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 1.9e-97 361.3 660 42.9
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 2.5e-97 360.9 829 38.6
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 7.3e-97 359.4 618 46.9
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.7e-96 356.7 655 42.4
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 3.1e-95 354.0 513 47.2
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.0e-94 351.3 428 53.5
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 2.6e-94 350.9 701 40.1
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.4e-94 350.5 714 42.6
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 9.9e-94 349.0 774 40.1
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 9.9e-94 349.0 447 51.0
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 2.2e-93 347.8 642 45.5
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 1.6e-91 341.7 444 51.4
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 4.6e-91 340.1 502 46.2
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 4.6e-91 340.1 749 43.7
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.3e-90 338.6 440 51.6
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 8.7e-90 335.9 792 39.5
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 3.6e-88 330.5 712 39.6
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 8.1e-88 329.3 740 41.1
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 3.1e-87 327.4 661 39.5
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 4.0e-87 327.0 457 47.9
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 1.5e-86 325.1 736 39.4
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 4.5e-86 323.6 727 39.5
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.9e-85 320.9 773 37.6
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 5.4e-84 316.6 862 37.1
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.1e-83 314.7 774 37.7
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.5e-81 307.8 405 50.1
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 5.6e-81 306.6 465 44.3
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 4.8e-80 303.5 687 35.7
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 2.0e-78 298.1 417 47.0
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.7e-77 295.0 490 44.1
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 2.9e-77 294.3 823 38.0
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 3.8e-77 293.9 454 45.6
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 6.4e-77 293.1 431 46.4
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 4.2e-76 290.4 443 44.5
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 3.0e-74 284.3 470 45.3
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.5e-73 282.0 667 41.1
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 2.0e-70 271.6 430 43.5
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 7.1e-68 263.1 396 42.7
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.8e-48 198.0 425 36.9
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.8e-48 198.0 425 36.9
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.5e-46 192.2 332 44.0
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 9.1e-39 166.4 240 47.5
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.8e-34 150.2 371 35.0
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 3.4e-33 147.9 383 35.5
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.8e-31 142.1 135 59.3
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 3.2e-28 131.3 496 39.7
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 7.2e-28 130.2 393 34.6
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 4.8e-24 117.5 136 51.5
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 2.4e-23 115.2 155 50.3
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.1e-23 114.4 152 49.3
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 1.3e-21 109.4 182 42.3
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 3.2e-15 88.2 307 30.0
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.5e-12 79.3 139 43.9
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.2e-11 76.3 307 32.9
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 2.8e-11 75.1 96 47.9
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 4.7e-11 74.3 60 63.3
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 2.6e-09 68.6 133 40.6
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.5e-06 58.2 41 70.7


User provided reference genes

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