Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 2.9e-108 395.2 196 100.0
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 4.2e-91 338.2 196 85.7
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 6.1e-90 334.3 193 85.5
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 6.1e-90 334.3 193 85.5
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 1.4e-89 333.2 193 85.0
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 1.8e-89 332.8 198 84.3
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 2.4e-86 322.4 193 82.9
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 3.0e-81 305.4 167 88.0
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 1.2e-80 303.5 167 87.4
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 2.0e-80 302.8 164 87.8
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 2.0e-80 302.8 164 87.8
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 3.3e-67 258.8 195 65.1
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 2.6e-64 249.2 171 66.7
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 3.7e-63 245.4 168 65.5
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 1.9e-62 243.0 167 64.7
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 9.2e-62 240.7 165 66.7
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 1.6e-61 240.0 189 60.3
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 7.8e-61 237.7 168 64.3
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 1.7e-60 236.5 159 66.0
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 2.3e-60 236.1 169 64.5
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 3.9e-60 235.3 176 59.7
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.9e-60 235.3 176 62.5
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 6.6e-60 234.6 202 56.9
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 6.6e-60 234.6 170 65.3
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 8.6e-60 234.2 179 59.2
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.1e-59 233.8 168 64.9
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 1.5e-59 233.4 160 66.2
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 1.9e-59 233.0 168 64.3
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 1.9e-59 233.0 183 60.1
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 2.5e-59 232.6 183 59.6
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 3.3e-59 232.3 161 64.6
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 3.3e-59 232.3 161 65.8
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 5.6e-59 231.5 176 61.4
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 5.6e-59 231.5 197 58.4
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 5.6e-59 231.5 164 63.4
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 7.3e-59 231.1 163 64.4
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 9.5e-59 230.7 184 60.9
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.2e-58 230.3 189 59.8
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 1.2e-58 230.3 167 65.9
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.6e-58 229.9 168 64.3
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 1.6e-58 229.9 171 60.8
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 2.1e-58 229.6 190 56.3
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 2.1e-58 229.6 188 57.4
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 2.8e-58 229.2 190 56.8
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 2.8e-58 229.2 190 56.8
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 3.6e-58 228.8 168 61.9
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 4.7e-58 228.4 161 65.2
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 8.1e-58 227.6 186 58.6
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 1.1e-57 227.3 161 65.2
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 1.4e-57 226.9 183 57.4
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 1.8e-57 226.5 183 58.5
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.0e-57 225.3 188 54.8
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 5.2e-57 224.9 171 60.2
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 6.8e-57 224.6 165 60.0
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 6.8e-57 224.6 161 62.7
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 6.8e-57 224.6 169 59.8
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 6.8e-57 224.6 168 61.9
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 8.9e-57 224.2 164 61.0
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 1.2e-56 223.8 195 56.4
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 1.2e-56 223.8 164 63.4
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 1.2e-56 223.8 164 61.6
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 1.2e-56 223.8 186 57.0
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 1.2e-56 223.8 163 62.6
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 1.2e-56 223.8 163 62.6
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.0e-56 223.0 164 61.0
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 2.6e-56 222.6 164 61.6
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.6e-56 222.6 164 61.0
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 2.6e-56 222.6 164 61.0
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 3.4e-56 222.2 190 56.8
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 3.4e-56 222.2 183 56.3
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.4e-56 221.9 188 54.3
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 4.4e-56 221.9 187 55.1
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 1.7e-55 219.9 164 61.6
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 1.7e-55 219.9 163 60.7
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 2.2e-55 219.5 169 58.6
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 3.8e-55 218.8 164 60.4
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 4.9e-55 218.4 164 61.0
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 8.4e-55 217.6 161 60.9
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 8.4e-55 217.6 163 58.9
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.1e-54 217.2 165 58.8
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.9e-54 216.5 161 61.5
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.9e-54 216.5 183 57.4
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.9e-54 216.5 183 56.8
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 1.9e-54 216.5 187 55.1
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 1.9e-54 216.5 190 53.7
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 2.4e-54 216.1 163 58.9
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.2e-54 215.3 161 60.2
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 5.4e-54 214.9 178 59.6
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 7.1e-54 214.5 161 59.0
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 1.2e-53 213.8 161 58.4
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 1.7e-52 209.9 157 59.9
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 7.3e-51 204.5 161 59.6
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 1.6e-50 203.4 188 54.8
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 8.1e-50 201.1 173 55.5
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 2.6e-48 196.1 165 55.8
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 9.9e-48 194.1 179 50.3
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 1.9e-46 189.9 160 58.1
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 9.3e-46 187.6 137 62.0
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 4.0e-41 172.2 146 52.7
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 4.0e-41 172.2 122 63.1
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 8.4e-39 164.5 156 51.3
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 2.4e-38 162.9 167 47.9
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 1.9e-35 153.3 120 60.0
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 1.3e-34 150.6 116 60.3
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 2.8e-34 149.4 140 52.1
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 3.7e-34 149.1 167 45.5
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 2.4e-33 146.4 113 57.5
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 2.0e-32 143.3 143 50.3
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 3.4e-32 142.5 111 58.6
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 3.4e-32 142.5 92 66.3
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 3.2e-30 136.0 123 52.0
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 2.1e-29 133.3 127 52.8
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 1.5e-27 127.1 116 51.7
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 2.2e-23 113.2 212 30.2
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 4.9e-23 112.1 170 38.8
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 6.7e-20 101.7 57 82.5
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 2.5e-19 99.8 160 35.6
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 8.5e-15 84.7 53 69.8
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 8.5e-15 84.7 53 69.8
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 3.9e-12 75.9 53 66.0
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 2.5e-11 73.2 50 66.0
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.1e-09 67.8 54 57.4
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 5.9e-08 62.0 38 63.2


User provided reference genes

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