Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 4.8e-282 973.8 475 100.0
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.7e-205 718.4 384 91.1
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 3.9e-183 645.2 368 86.1
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 6.3e-181 637.9 368 85.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 6.9e-180 634.4 368 84.8
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 6.9e-180 634.4 368 85.1
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 7.7e-179 630.9 368 83.4
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 8.8e-175 617.5 366 83.6
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 8.8e-175 617.5 366 84.2
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 8.8e-175 617.5 366 84.2
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 3.7e-173 612.1 366 83.3
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 8.2e-173 610.9 366 83.3
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 1.1e-172 610.5 366 83.1
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 2.4e-172 609.4 367 82.8
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 1.3e-170 603.6 366 82.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 5.7e-166 588.2 364 77.7
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 3.8e-146 522.3 367 67.8
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 2.5e-145 519.6 367 67.3
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.6e-144 516.9 367 66.5
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 5.2e-143 511.9 367 66.5
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 2.0e-142 510.0 367 65.9
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 3.4e-142 509.2 367 65.9
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 7.5e-142 508.1 367 66.8
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 7.5e-142 508.1 367 67.3
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 7.5e-142 508.1 367 66.2
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.7e-141 506.9 359 66.6
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 2.9e-141 506.1 364 65.9
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 3.7e-141 505.8 367 64.3
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 3.7e-141 505.8 369 64.0
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 4.9e-141 505.4 367 65.4
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 4.9e-141 505.4 367 65.1
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 6.4e-141 505.0 365 66.6
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 8.3e-141 504.6 370 64.6
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 2.4e-140 503.1 360 65.6
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 4.1e-140 502.3 363 66.4
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 5.4e-140 501.9 365 64.7
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 2.0e-139 500.0 360 65.6
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 2.7e-139 499.6 367 64.9
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 4.6e-139 498.8 360 66.7
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 1.3e-138 497.3 364 64.6
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.3e-138 497.3 368 64.9
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 3.0e-138 496.1 365 64.4
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.9e-138 495.7 364 65.4
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 3.9e-138 495.7 364 65.4
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 6.6e-138 495.0 364 65.4
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 6.6e-138 495.0 378 62.4
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.9e-137 493.4 364 65.1
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.5e-137 493.0 364 65.1
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.3e-137 492.3 364 65.1
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 4.3e-137 492.3 370 62.7
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 5.6e-137 491.9 364 65.1
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 3.6e-136 489.2 362 63.8
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 6.2e-136 488.4 364 65.7
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 8.0e-136 488.0 365 64.9
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.8e-135 486.9 364 65.9
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 6.8e-135 485.0 363 63.4
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 8.9e-135 484.6 370 62.7
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 1.2e-134 484.2 379 61.7
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 1.5e-134 483.8 367 61.9
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.5e-134 483.8 364 62.1
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 2.6e-134 483.0 367 62.4
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 2.6e-134 483.0 362 62.7
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 2.6e-134 483.0 376 61.7
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 3.4e-134 482.6 367 63.8
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 3.4e-134 482.6 370 64.3
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 4.4e-134 482.3 367 63.2
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 5.8e-134 481.9 364 63.5
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 5.8e-134 481.9 363 63.1
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 1.3e-133 480.7 363 62.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 1.7e-133 480.3 364 62.4
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.7e-133 479.2 363 62.5
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 4.9e-133 478.8 367 60.8
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 6.4e-133 478.4 367 62.7
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 6.4e-133 478.4 367 61.6
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 6.4e-133 478.4 371 63.1
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.1e-132 477.6 376 61.7
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.4e-132 477.2 359 64.3
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 1.4e-132 477.2 362 64.9
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 1.4e-132 477.2 346 67.1
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 4.1e-132 475.7 359 62.7
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 2.0e-131 473.4 371 63.1
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 2.0e-131 473.4 363 61.2
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 2.7e-131 473.0 355 64.5
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 2.7e-131 473.0 363 61.7
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 7.8e-131 471.5 363 61.7
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 1.3e-130 470.7 360 62.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 3.0e-130 469.5 381 60.9
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 3.9e-130 469.2 363 61.4
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 3.9e-130 469.2 371 62.5
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 6.6e-130 468.4 366 63.1
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 8.6e-130 468.0 367 62.9
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 7.3e-129 464.9 367 60.8
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 2.3e-127 459.9 362 63.3
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 4.0e-127 459.1 366 61.5
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 6.4e-125 451.8 350 62.0
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 3.5e-123 446.0 363 59.2
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 1.5e-121 440.7 360 61.1
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 3.1e-119 433.0 358 57.5
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.4e-108 396.7 401 53.4
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 7.3e-105 385.2 346 54.6
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 3.6e-104 382.9 309 60.5
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 4.8e-104 382.5 360 52.5
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 4.8e-104 382.5 388 48.5
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.1e-104 381.7 250 70.0
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 1.1e-103 381.3 367 53.7
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 3.2e-100 369.8 349 51.6
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.4e-92 344.4 278 59.7
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.3e-81 306.6 268 56.3
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.8e-80 303.5 194 70.1
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 7.2e-68 262.3 169 71.0
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.9e-67 258.8 171 71.3
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 2.8e-48 197.2 350 35.4
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 1.8e-39 167.9 415 30.8
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 5.5e-36 156.4 434 27.9
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.8e-34 151.4 170 47.1
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 7.3e-28 129.4 93 73.1
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 7.3e-28 129.4 93 73.1
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.1e-27 127.9 95 64.2
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 3.6e-27 127.1 156 46.2
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 3.6e-27 127.1 364 29.4
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 6.8e-26 122.9 99 66.7
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 9.8e-25 119.0 83 62.7
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.4e-23 114.4 216 33.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.2e-23 114.0 84 65.5
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 6.0e-22 109.8 77 68.8
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 1.0e-21 109.0 84 64.3
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.3e-21 108.6 86 61.6
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 7.8e-14 82.8 48 81.2
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 1.3e-13 82.0 48 81.2
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.5e-12 75.9 41 78.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.6e-11 75.1 59 49.2
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 4.9e-08 63.5 106 35.8


User provided reference genes

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