Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 0.0e+00 1639.4 887 100.0
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 0.0e+00 1350.9 905 78.1
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 0.0e+00 1332.8 906 77.4
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 0.0e+00 1328.5 907 77.1
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 0.0e+00 1265.4 912 76.6
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 0.0e+00 1252.7 915 73.3
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 0.0e+00 1251.1 896 77.1
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 0.0e+00 1248.4 837 78.7
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 0.0e+00 1244.6 914 75.1
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 0.0e+00 1232.2 917 74.6
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 0.0e+00 1192.9 928 70.8
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 0.0e+00 1150.6 948 69.9
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 0.0e+00 1086.2 906 64.5
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 8.0e-254 880.9 907 52.1
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 1.5e-252 876.7 904 52.3
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 7.5e-244 847.8 909 51.3
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 1.8e-242 843.2 914 49.1
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 2.4e-242 842.8 910 51.8
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 5.3e-242 841.6 851 52.8
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 7.0e-242 841.3 858 53.1
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 2.0e-241 839.7 909 51.0
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 2.5e-239 832.8 907 50.5
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.2e-238 830.5 910 51.0
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 2.1e-238 829.7 907 50.2
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 2.7e-238 829.3 909 50.7
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 8.8e-237 824.3 924 49.5
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 1.2e-233 813.9 918 49.8
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 2.5e-231 806.2 966 49.8
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 3.3e-231 805.8 910 49.2
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 5.2e-229 798.5 858 50.9
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 1.2e-228 797.3 908 48.5
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 3.4e-228 795.8 856 50.6
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 3.4e-228 795.8 728 56.6
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 1.1e-226 790.8 910 48.5
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 1.1e-226 790.8 884 49.0
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 9.2e-226 787.7 911 47.3
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 3.9e-224 782.3 963 46.4
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 4.3e-223 778.9 904 48.9
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 9.5e-223 777.7 904 48.3
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 4.7e-222 775.4 925 47.5
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 1.0e-221 774.2 893 48.6
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 2.3e-221 773.1 739 54.9
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 8.9e-221 771.2 914 46.5
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 3.4e-220 769.2 904 48.3
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 9.2e-218 761.1 903 47.4
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 4.6e-217 758.8 920 46.1
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 4.6e-217 758.8 903 47.1
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 3.9e-216 755.7 910 46.6
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 1.9e-215 753.4 914 46.9
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 3.3e-215 752.7 858 49.0
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 7.3e-215 751.5 903 47.0
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 8.0e-214 748.0 903 46.2
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 1.1e-213 747.7 913 46.5
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 2.3e-213 746.5 904 46.6
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 3.7e-211 739.2 908 46.9
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 3.2e-210 736.1 908 44.7
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 5.4e-210 735.3 907 44.8
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 6.0e-209 731.9 911 46.7
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 3.9e-208 729.2 910 45.8
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 6.6e-208 728.4 865 45.2
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 6.8e-205 718.4 922 44.0
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 1.7e-203 713.8 912 44.7
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 6.0e-201 705.3 911 42.6
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 1.2e-198 697.6 904 44.8
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 1.4e-197 694.1 993 42.6
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 5.2e-197 692.2 916 43.7
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 1.2e-196 691.0 922 44.4
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 4.2e-194 682.6 737 49.9
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 4.3e-191 672.5 765 47.8
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 7.3e-191 671.8 738 50.1
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 8.4e-187 658.3 899 42.2
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 1.7e-184 650.6 798 46.6
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 1.7e-184 650.6 948 41.7
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 2.8e-182 643.3 915 41.6
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 6.5e-171 605.5 891 40.3
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.1e-170 604.7 826 42.1
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 6.5e-163 578.9 863 40.7
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 6.5e-155 552.4 653 49.8
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 7.9e-145 518.8 646 46.1
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 4.1e-141 506.5 987 35.2
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 7.2e-138 495.7 964 35.8
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 2.7e-137 493.8 864 35.2
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 4.4e-127 459.9 868 33.6
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 2.3e-120 437.6 807 33.8
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 1.3e-118 431.8 499 47.7
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 3.6e-113 413.7 495 46.5
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.4e-101 375.2 509 44.2
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 1.9e-98 364.8 859 31.3
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 6.8e-96 356.3 416 47.4
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 2.4e-93 347.8 481 43.0
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 5.4e-93 346.7 422 46.9
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 2.9e-86 324.3 379 48.5
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 5.2e-80 303.5 646 32.2
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 6.0e-76 290.0 512 39.1
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 5.1e-75 287.0 359 43.7
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 9.6e-74 282.7 316 49.4
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 6.4e-70 270.0 371 43.7
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 7.9e-68 263.1 404 39.1
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 1.6e-57 228.8 449 33.0
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 4.9e-54 217.2 266 46.2
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 5.3e-48 197.2 291 43.0
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.2e-44 186.0 394 32.0
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 3.9e-43 181.0 186 50.0
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 7.4e-34 150.2 168 47.6
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.7e-33 149.1 208 40.4
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.2e-31 142.9 179 43.6
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 2.1e-28 132.1 247 36.0
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 2.1e-28 132.1 247 36.0
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.3e-27 128.6 193 40.4
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 5.2e-27 127.5 251 35.9
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 1.5e-26 125.9 200 37.5
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 1.2e-23 116.3 189 41.8
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 1.2e-23 116.3 189 41.8
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 3.2e-21 108.2 139 42.4
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 1.8e-19 102.4 96 53.1
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 4.1e-16 91.3 151 35.1
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 9.1e-16 90.1 126 40.5
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.6e-15 89.4 190 33.2
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 2.7e-15 88.6 113 45.1
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 5.9e-15 87.4 75 57.3
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 5.0e-14 84.3 118 45.8
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 1.1e-13 83.2 95 47.4
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 1.2e-12 79.7 108 45.4
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 1.0e-11 76.6 94 46.8
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 5.2e-11 74.3 72 50.0
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 5.2e-11 74.3 72 50.0
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 2.0e-10 72.4 114 38.6
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 5.7e-10 70.9 112 41.1
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.8e-08 65.9 129 30.2
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 1.8e-08 65.9 43 74.4
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 5.4e-08 64.3 50 60.0
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 1.2e-07 63.2 40 77.5
SEGI_12195 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 3.5e-07 61.6 111 31.5
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 4.5e-07 61.2 87 39.1
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 1.0e-06 60.1 93 32.3
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 1.0e-06 60.1 142 31.0
SEGI_10601 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 1.7e-06 59.3 70 42.9


User provided reference genes

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