Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 4.1e-254 880.9 454 100.0
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 7.8e-197 690.6 495 75.8
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 2.7e-189 665.6 469 78.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 4.8e-178 628.2 426 77.7
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 2.4e-177 625.9 458 74.9
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 1.3e-175 620.2 508 69.7
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 4.2e-174 615.1 501 70.1
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.3e-170 603.6 461 71.6
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.1e-169 600.5 458 72.5
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 2.6e-168 595.9 458 71.6
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 3.4e-168 595.5 460 72.2
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 3.3e-163 578.9 462 71.4
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 3.6e-149 532.3 390 73.3
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 6.3e-146 521.5 429 68.8
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.4e-144 515.8 399 71.4
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 2.9e-143 512.7 285 83.2
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 6.5e-143 511.5 284 82.7
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.9e-142 510.0 283 82.0
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.2e-142 508.8 286 81.8
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.2e-141 507.3 283 82.3
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 2.7e-141 506.1 286 81.1
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.3e-140 503.1 381 69.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.0e-140 502.7 285 81.4
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 3.0e-140 502.7 285 81.4
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.5e-139 500.4 284 81.0
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 4.4e-139 498.8 283 79.5
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 7.4e-139 498.0 284 81.3
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.3e-138 497.3 282 80.1
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.5e-136 488.8 285 77.9
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 1.7e-135 486.9 284 78.9
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.7e-135 486.9 349 69.3
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 6.5e-135 485.0 286 79.4
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 4.2e-134 482.3 264 82.6
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 9.4e-134 481.1 280 77.5
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 9.4e-134 481.1 335 69.9
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.7e-133 479.6 315 74.6
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.7e-133 479.6 459 56.4
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 3.6e-133 479.2 307 73.3
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 4.7e-133 478.8 265 82.6
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 4.7e-133 478.8 329 72.9
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 2.3e-132 476.5 264 81.8
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 3.0e-132 476.1 333 70.6
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.2e-132 475.3 286 75.9
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.2e-132 475.3 336 71.7
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 8.8e-132 474.6 276 76.4
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 2.6e-131 473.0 387 66.7
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 3.3e-131 472.6 263 81.4
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 4.4e-131 472.2 263 81.4
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 9.7e-131 471.1 280 76.8
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.3e-130 470.7 263 81.4
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.3e-130 470.7 335 68.7
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 6.3e-130 468.4 348 68.1
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 6.3e-130 468.4 268 79.5
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 6.3e-130 468.4 418 61.5
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 8.2e-130 468.0 464 55.2
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.8e-129 466.8 354 67.8
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 3.1e-129 466.1 265 79.2
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 4.1e-129 465.7 331 70.1
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.3e-129 465.3 307 71.7
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.2e-128 464.2 280 73.9
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.6e-128 463.8 260 79.6
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.6e-128 463.8 255 82.0
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 2.0e-128 463.4 471 56.7
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.0e-128 463.4 277 77.3
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 3.5e-128 462.6 287 75.3
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.5e-128 462.6 407 57.7
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.5e-128 462.2 322 70.8
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 4.5e-128 462.2 268 79.5
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 4.5e-128 462.2 269 79.2
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 4.5e-128 462.2 338 68.9
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 5.9e-128 461.8 255 81.6
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.7e-127 460.3 252 81.7
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.2e-127 459.9 272 77.6
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 1.1e-126 457.6 431 57.1
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.1e-126 457.6 461 54.0
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 7.2e-126 454.9 259 79.2
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 7.2e-126 454.9 260 79.2
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 7.2e-126 454.9 260 78.5
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 9.4e-126 454.5 261 77.8
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 9.4e-126 454.5 425 57.9
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.2e-125 454.1 288 72.6
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.2e-125 454.1 392 62.5
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.8e-124 450.3 260 78.1
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.3e-124 449.9 290 73.4
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.2e-123 447.6 277 72.6
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.5e-123 447.2 260 77.7
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 5.7e-123 445.3 259 78.4
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.3e-122 444.1 290 71.4
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 2.2e-122 443.4 263 75.3
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 3.7e-122 442.6 257 78.6
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 4.8e-122 442.2 260 76.9
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 6.3e-122 441.8 331 64.0
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.3e-121 438.7 292 70.2
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 3.5e-120 436.0 396 58.3
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 7.7e-120 434.9 292 70.5
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 7.7e-120 434.9 418 58.6
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 1.0e-119 434.5 238 81.5
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 3.8e-119 432.6 288 71.9
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 8.5e-119 431.4 269 73.2
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-118 430.3 435 52.6
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.9e-118 430.3 276 68.8
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.2e-117 427.6 391 57.3
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 8.0e-117 424.9 349 60.7
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.7e-115 418.7 320 64.1
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.2e-114 416.8 329 63.8
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 4.1e-113 412.5 238 76.9
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 1.6e-112 410.6 328 63.1
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 3.5e-112 409.5 464 51.5
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 2.3e-111 406.8 274 69.0
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.1e-109 400.2 323 60.1
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.8e-108 397.1 432 49.1
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 5.7e-107 392.1 303 64.0
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 2.2e-106 390.2 325 58.8
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 3.6e-101 372.9 204 79.9
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.5e-99 367.5 303 58.4
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 9.8e-99 364.8 257 67.3
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.7e-98 362.8 303 57.8
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.9e-98 362.5 206 74.8
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.5e-94 350.9 325 52.6
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.7e-90 337.4 183 82.5
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.0e-87 328.2 195 75.9
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.6e-86 322.4 274 58.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.7e-85 319.3 276 55.4
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 3.1e-84 316.6 177 80.8
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.9e-84 315.1 173 82.1
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.9e-84 315.1 173 82.1
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 3.4e-83 313.2 198 73.2
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 2.2e-82 310.5 173 81.5
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.9e-82 310.1 205 73.2
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 2.9e-82 310.1 245 60.0
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.1e-81 306.2 194 73.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 7.8e-80 302.0 270 57.0
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.7e-72 276.9 380 44.7
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.0e-71 275.0 400 43.5
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 4.3e-70 269.6 265 52.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 8.1e-69 265.4 231 55.4
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 5.1e-63 246.1 312 43.9
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-62 245.0 242 48.8
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.5e-62 243.8 191 61.8
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.7e-56 223.8 204 54.9
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 6.0e-56 222.6 180 55.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.3e-55 220.7 157 68.2
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.0e-55 220.3 161 65.8
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.8e-53 213.8 152 67.1
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 2.9e-50 203.8 222 46.4
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 6.0e-48 196.1 174 54.6
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 7.9e-48 195.7 230 46.1
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 6.5e-42 176.0 128 62.5
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 1.1e-41 175.3 276 39.1
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.1e-41 175.3 124 62.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.1e-33 148.7 91 71.4
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.8e-29 133.3 79 74.7
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 9.7e-14 82.4 50 70.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 9.7e-14 82.4 50 70.0
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 1.7e-13 81.6 53 67.9
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 4.0e-07 60.5 143 29.4
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.5e-06 58.5 188 25.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 9.7e-06 55.8 211 26.5
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 9.7e-06 55.8 83 33.7


User provided reference genes

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