Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 6.2e-200 700.7 373 100.0
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 4.4e-129 465.3 441 64.6
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.8e-127 459.9 441 64.2
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.7e-126 456.1 517 56.7
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 2.9e-125 452.6 442 60.6
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.8e-122 443.4 501 56.3
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 2.9e-117 426.0 440 59.5
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 9.5e-116 421.0 473 55.2
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.0e-114 417.5 493 55.4
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.0e-114 417.5 493 55.4
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.0e-114 417.5 493 55.4
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 5.2e-114 415.2 497 54.7
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 1.8e-111 406.8 491 54.4
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 5.2e-106 388.7 383 62.1
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.3e-101 374.0 529 49.0
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 4.0e-98 362.5 392 58.7
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.2e-95 352.8 311 68.2
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.1e-83 313.5 388 50.8
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.0e-82 308.1 185 89.7
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 8.4e-80 301.6 389 48.3
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.0e-77 294.7 304 60.5
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 2.3e-77 293.5 407 46.7
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 2.3e-77 293.5 389 47.8
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.9e-77 292.7 395 47.3
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 3.9e-77 292.7 395 47.8
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 6.6e-77 292.0 398 46.5
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 6.6e-77 292.0 419 46.3
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.1e-76 291.2 408 46.6
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.5e-76 290.8 388 47.7
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.3e-76 289.7 403 47.4
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 4.8e-75 285.8 393 46.6
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 2.4e-74 283.5 415 45.8
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.1e-74 283.1 396 44.9
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 1.2e-73 281.2 385 45.5
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 3.4e-73 279.6 388 46.6
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 4.5e-73 279.3 387 48.8
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 5.8e-73 278.9 386 46.1
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 6.4e-72 275.4 391 47.8
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 1.1e-71 274.6 382 45.8
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 4.2e-71 272.7 382 43.5
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.4e-71 272.3 387 45.5
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 3.5e-70 269.6 386 46.1
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 3.5e-70 269.6 393 43.3
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 6.0e-70 268.9 386 47.7
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 7.9e-70 268.5 382 43.7
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 1.3e-69 267.7 380 44.7
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 2.3e-69 266.9 386 44.6
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.3e-69 266.9 252 60.7
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 2.3e-69 266.9 383 44.6
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 3.9e-69 266.2 378 44.2
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 5.1e-69 265.8 384 42.4
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 6.7e-69 265.4 390 45.6
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 8.7e-69 265.0 281 59.4
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 1.9e-68 263.8 339 48.7
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.9e-68 263.8 217 65.0
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 4.3e-68 262.7 353 45.9
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 7.4e-68 261.9 400 43.8
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 9.6e-68 261.5 391 43.2
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.3e-67 261.2 404 41.6
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 1.4e-66 257.7 268 55.6
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 9.0e-66 255.0 252 57.9
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.2e-65 254.6 403 43.2
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 1.5e-65 254.2 400 42.2
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 2.6e-65 253.4 340 48.2
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.6e-65 253.4 405 40.0
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.4e-65 253.1 397 44.3
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 9.9e-65 251.5 344 45.3
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.3e-64 251.1 219 62.6
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 2.2e-64 250.4 347 44.7
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 2.9e-64 250.0 401 42.1
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 2.9e-64 250.0 400 43.2
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 3.8e-64 249.6 298 51.0
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.4e-63 247.7 399 43.4
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.4e-63 247.7 308 47.7
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 3.2e-63 246.5 390 42.3
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 4.2e-63 246.1 393 43.3
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 5.5e-63 245.7 415 40.7
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 7.1e-63 245.4 332 47.0
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 2.7e-62 243.4 412 39.1
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.8e-61 240.7 341 45.2
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.9e-61 239.6 350 47.1
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 5.1e-61 239.2 249 54.2
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 5.1e-61 239.2 303 45.9
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.3e-60 236.5 376 42.6
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 7.4e-60 235.3 277 48.4
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 9.6e-60 235.0 349 45.3
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 9.6e-60 235.0 354 45.2
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 9.6e-60 235.0 246 54.5
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 8.2e-59 231.9 395 40.0
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 9.0e-58 228.4 246 54.1
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.2e-57 228.0 248 53.6
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.5e-57 227.6 320 45.9
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.0e-56 224.9 254 48.8
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 2.9e-56 223.4 317 45.4
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.4e-55 221.1 386 40.2
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 1.9e-55 220.7 391 38.4
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 1.6e-54 217.6 252 47.2
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.3e-53 214.5 248 52.8
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 5.1e-53 212.6 181 63.5
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 5.3e-50 202.6 353 39.1
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 5.3e-50 202.6 241 47.7
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 7.7e-49 198.7 282 45.0
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 2.2e-48 197.2 243 45.3
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 3.8e-48 196.4 381 34.4
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.5e-48 195.3 272 46.0
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 5.5e-47 192.6 177 58.8
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 3.0e-45 186.8 395 36.5
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.5e-44 184.5 283 42.4
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.3e-44 183.3 415 33.0
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 1.8e-42 177.6 273 39.6
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.8e-42 177.6 359 36.8
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.5e-41 174.5 379 35.6
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 7.7e-41 172.2 371 37.5
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 8.5e-40 168.7 338 36.1
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.1e-39 168.3 130 71.5
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.1e-39 168.3 130 71.5
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.2e-39 165.6 337 39.5
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.6e-38 164.5 419 33.2
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.1e-38 164.1 329 36.2
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.8e-37 161.0 180 48.9
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 1.1e-34 151.8 273 37.7
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 5.3e-34 149.4 272 38.6
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.4e-31 141.4 273 37.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.1e-30 137.5 86 82.6
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 2.1e-30 137.5 361 34.9
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 2.0e-28 131.0 228 40.8
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.0e-28 131.0 204 37.3
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.7e-27 127.9 195 40.5
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.5e-24 115.9 137 48.9
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 6.5e-24 115.9 121 52.1
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 2.7e-22 110.5 117 52.1
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 4.7e-22 109.8 172 41.9
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.0e-21 108.6 316 32.3
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 6.7e-21 105.9 92 62.0
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 4.4e-20 103.2 81 58.0
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 2.2e-19 100.9 179 39.7
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.8e-19 100.5 116 48.3
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 3.7e-19 100.1 175 40.6
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 4.8e-19 99.8 81 60.5
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 9.1e-18 95.5 78 56.4
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 4.2e-15 86.7 112 44.6
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 6.1e-14 82.8 204 29.4
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 4.4e-12 76.6 245 33.1
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 2.2e-11 74.3 310 28.1
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 1.2e-09 68.6 69 53.6
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 5.9e-09 66.2 99 39.4
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.3e-08 65.1 55 54.5
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.1e-07 62.0 164 30.5
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.1e-07 62.0 46 56.5
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 6.1e-06 56.2 70 44.3


User provided reference genes

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